Literature DB >> 31043754

Abundant associations with gene expression complicate GWAS follow-up.

Boxiang Liu1,2, Michael J Gloudemans3,4, Abhiram S Rao3,5, Erik Ingelsson6,7,8, Stephen B Montgomery9,10.   

Abstract

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Year:  2019        PMID： 31043754      PMCID： PMC6904208          DOI： 10.1038/s41588-019-0404-0

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  14 in total

1.  Colocalization of GWAS and eQTL Signals Detects Target Genes.

Authors:  Farhad Hormozdiari; Martijn van de Bunt; Ayellet V Segrè; Xiao Li; Jong Wha J Joo; Michael Bilow; Jae Hoon Sul; Sriram Sankararaman; Bogdan Pasaniuc; Eleazar Eskin
Journal:  Am J Hum Genet       Date:  2016-11-17       Impact factor: 11.025

2.  Genetic Regulatory Mechanisms of Smooth Muscle Cells Map to Coronary Artery Disease Risk Loci.

Authors:  Boxiang Liu; Milos Pjanic; Ting Wang; Trieu Nguyen; Michael Gloudemans; Abhiram Rao; Victor G Castano; Sylvia Nurnberg; Daniel J Rader; Susannah Elwyn; Erik Ingelsson; Stephen B Montgomery; Clint L Miller; Thomas Quertermous
Journal:  Am J Hum Genet       Date:  2018-08-23       Impact factor: 11.025

3.  Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.

Authors:  Zhihong Zhu; Futao Zhang; Han Hu; Andrew Bakshi; Matthew R Robinson; Joseph E Powell; Grant W Montgomery; Michael E Goddard; Naomi R Wray; Peter M Visscher; Jian Yang
Journal:  Nat Genet       Date:  2016-03-28       Impact factor: 38.330

4.  LocusZoom: regional visualization of genome-wide association scan results.

Authors:  Randall J Pruim; Ryan P Welch; Serena Sanna; Tanya M Teslovich; Peter S Chines; Terry P Gliedt; Michael Boehnke; Gonçalo R Abecasis; Cristen J Willer
Journal:  Bioinformatics       Date:  2010-07-15       Impact factor: 6.937

5.  Identification of 55,000 Replicated DNA Methylation QTL.

Authors:  Allan F McRae; Riccardo E Marioni; Sonia Shah; Jian Yang; Joseph E Powell; Sarah E Harris; Jude Gibson; Anjali K Henders; Lisa Bowdler; Jodie N Painter; Lee Murphy; Nicholas G Martin; John M Starr; Naomi R Wray; Ian J Deary; Peter M Visscher; Grant W Montgomery
Journal:  Sci Rep       Date:  2018-12-04       Impact factor: 4.379

6.  Bayesian test for colocalisation between pairs of genetic association studies using summary statistics.

Authors:  Claudia Giambartolomei; Damjan Vukcevic; Eric E Schadt; Lude Franke; Aroon D Hingorani; Chris Wallace; Vincent Plagnol
Journal:  PLoS Genet       Date:  2014-05-15       Impact factor: 5.917

7.  FINEMAP: efficient variable selection using summary data from genome-wide association studies.

Authors:  Christian Benner; Chris C A Spencer; Aki S Havulinna; Veikko Salomaa; Samuli Ripatti; Matti Pirinen
Journal:  Bioinformatics       Date:  2016-01-14       Impact factor: 6.937

8.  Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci.

Authors:  Eilis Hannon; Helen Spiers; Joana Viana; Ruth Pidsley; Joe Burrage; Therese M Murphy; Claire Troakes; Gustavo Turecki; Michael C O'Donovan; Leonard C Schalkwyk; Nicholas J Bray; Jonathan Mill
Journal:  Nat Neurosci       Date:  2015-11-30       Impact factor: 24.884

9.  Genetic effects on gene expression across human tissues.

Authors:  Alexis Battle; Christopher D Brown; Barbara E Engelhardt; Stephen B Montgomery
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

10.  Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.

Authors:  Wei Zhao; Asif Rasheed; Emmi Tikkanen; Jung-Jin Lee; Adam S Butterworth; Joanna M M Howson; Themistocles L Assimes; Rajiv Chowdhury; Marju Orho-Melander; Scott Damrauer; Aeron Small; Senay Asma; Minako Imamura; Toshimasa Yamauch; John C Chambers; Peng Chen; Bishwa R Sapkota; Nabi Shah; Sehrish Jabeen; Praveen Surendran; Yingchang Lu; Weihua Zhang; Atif Imran; Shahid Abbas; Faisal Majeed; Kevin Trindade; Nadeem Qamar; Nadeem Hayyat Mallick; Zia Yaqoob; Tahir Saghir; Syed Nadeem Hasan Rizvi; Anis Memon; Syed Zahed Rasheed; Fazal-Ur-Rehman Memon; Khalid Mehmood; Naveeduddin Ahmed; Irshad Hussain Qureshi; Wasim Iqbal; Uzma Malik; Narinder Mehra; Jane Z Kuo; Wayne H-H Sheu; Xiuqing Guo; Chao A Hsiung; Jyh-Ming J Juang; Kent D Taylor; Yi-Jen Hung; Wen-Jane Lee; Thomas Quertermous; I-Te Lee; Chih-Cheng Hsu; Erwin P Bottinger; Sarju Ralhan; Yik Ying Teo; Tzung-Dau Wang; Dewan S Alam; Emanuele Di Angelantonio; Steve Epstein; Sune F Nielsen; Børge G Nordestgaard; Anne Tybjaerg-Hansen; Robin Young; Marianne Benn; Ruth Frikke-Schmidt; Pia R Kamstrup; J Wouter Jukema; Naveed Sattar; Roelof Smit; Ren-Hua Chung; Kae-Woei Liang; Sonia Anand; Dharambir K Sanghera; Samuli Ripatti; Ruth J F Loos; Jaspal S Kooner; E Shyong Tai; Jerome I Rotter; Yii-Der Ida Chen; Philippe Frossard; Shiro Maeda; Takashi Kadowaki; Muredach Reilly; Guillaume Pare; Olle Melander; Veikko Salomaa; Daniel J Rader; John Danesh; Benjamin F Voight; Danish Saleheen
Journal:  Nat Genet       Date:  2017-09-04       Impact factor: 38.330
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  69 in total

1.  Transcriptome-wide association study reveals candidate causal genes for lung cancer.

Authors:  Yohan Bossé; Zhonglin Li; Jun Xia; Venkata Manem; Robert Carreras-Torres; Aurélie Gabriel; Nathalie Gaudreault; Demetrius Albanes; Melinda C Aldrich; Angeline Andrew; Susanne Arnold; Heike Bickeböller; Stig E Bojesen; Paul Brennan; Hans Brunnstrom; Neil Caporaso; Chu Chen; David C Christiani; John K Field; Gary Goodman; Kjell Grankvist; Richard Houlston; Mattias Johansson; Mikael Johansson; Lambertus A Kiemeney; Stephen Lam; Maria T Landi; Philip Lazarus; Loic Le Marchand; Geoffrey Liu; Olle Melander; Gadi Rennert; Angela Risch; Susan M Rosenberg; Matthew B Schabath; Sanjay Shete; Zhuoyi Song; Victoria L Stevens; Adonina Tardon; H-Erich Wichmann; Penella Woll; Shan Zienolddiny; Ma'en Obeidat; Wim Timens; Rayjean J Hung; Philippe Joubert; Christopher I Amos; James D McKay
Journal:  Int J Cancer       Date:  2019-12-09       Impact factor: 7.396

2.  Enhancer Domains Predict Gene Pathogenicity and Inform Gene Discovery in Complex Disease.

Authors:  Xinchen Wang; David B Goldstein
Journal:  Am J Hum Genet       Date:  2020-02-06       Impact factor: 11.025

3.  Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations.

Authors:  Guangsheng Pei; Ruifeng Hu; Yulin Dai; Astrid Marilyn Manuel; Zhongming Zhao; Peilin Jia
Journal:  Nucleic Acids Res       Date:  2021-01-11       Impact factor: 16.971

Review 4.  Identifying causal variants and genes using functional genomics in specialized cell types and contexts.

Authors:  Boxiang Liu; Stephen B Montgomery
Journal:  Hum Genet       Date:  2019-07-17       Impact factor: 4.132

5.  CSEA-DB: an omnibus for human complex trait and cell type associations.

Authors:  Yulin Dai; Ruifeng Hu; Astrid Marilyn Manuel; Andi Liu; Peilin Jia; Zhongming Zhao
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

6.  The GTEx Consortium atlas of genetic regulatory effects across human tissues.

Authors: 
Journal:  Science       Date:  2020-09-11       Impact factor: 47.728

7.  eQTL Colocalization Analyses Identify NTN4 as a Candidate Breast Cancer Risk Gene.

Authors:  Jonathan Beesley; Haran Sivakumaran; Mahdi Moradi Marjaneh; Wei Shi; Kristine M Hillman; Susanne Kaufmann; Nehal Hussein; Siddhartha Kar; Luize G Lima; Sunyoung Ham; Andreas Möller; Georgia Chenevix-Trench; Stacey L Edwards; Juliet D French
Journal:  Am J Hum Genet       Date:  2020-08-31       Impact factor: 11.025

8.  Evaluating the cardiovascular safety of sclerostin inhibition using evidence from meta-analysis of clinical trials and human genetics.

Authors:  Jonas Bovijn; Kristi Krebs; Chia-Yen Chen; Ruth Boxall; Jenny C Censin; Teresa Ferreira; Sara L Pulit; Craig A Glastonbury; Samantha Laber; Iona Y Millwood; Kuang Lin; Liming Li; Zhengming Chen; Lili Milani; George Davey Smith; Robin G Walters; Reedik Mägi; Benjamin M Neale; Cecilia M Lindgren; Michael V Holmes
Journal:  Sci Transl Med       Date:  2020-06-24       Impact factor: 17.956

Review 9.  Epigenomic and transcriptomic analysis of chronic inflammatory diseases.

Authors:  Sabrina Ka Man Tam; Danny Chi Yeu Leung
Journal:  Genes Genomics       Date:  2021-02-27       Impact factor: 1.839

10.  Genetic modifiers of risk and age at onset in GBA associated Parkinson's disease and Lewy body dementia.

Authors:  Cornelis Blauwendraat; Xylena Reed; Lynne Krohn; Karl Heilbron; Sara Bandres-Ciga; Manuela Tan; J Raphael Gibbs; Dena G Hernandez; Ravindran Kumaran; Rebekah Langston; Luis Bonet-Ponce; Roy N Alcalay; Sharon Hassin-Baer; Lior Greenbaum; Hirotaka Iwaki; Hampton L Leonard; Francis P Grenn; Jennifer A Ruskey; Marya Sabir; Sarah Ahmed; Mary B Makarious; Lasse Pihlstrøm; Mathias Toft; Jacobus J van Hilten; Johan Marinus; Claudia Schulte; Kathrin Brockmann; Manu Sharma; Ari Siitonen; Kari Majamaa; Johanna Eerola-Rautio; Pentti J Tienari; Alexander Pantelyat; Argye E Hillis; Ted M Dawson; Liana S Rosenthal; Marilyn S Albert; Susan M Resnick; Luigi Ferrucci; Christopher M Morris; Olga Pletnikova; Juan Troncoso; Donald Grosset; Suzanne Lesage; Jean-Christophe Corvol; Alexis Brice; Alastair J Noyce; Eliezer Masliah; Nick Wood; John Hardy; Lisa M Shulman; Joseph Jankovic; Joshua M Shulman; Peter Heutink; Thomas Gasser; Paul Cannon; Sonja W Scholz; Huw Morris; Mark R Cookson; Mike A Nalls; Ziv Gan-Or; Andrew B Singleton
Journal:  Brain       Date:  2020-01-01       Impact factor: 13.501
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