Literature DB >> 31043728

Synthesis and breakdown of universal metabolic precursors promoted by iron.

Kamila B Muchowska1, Sreejith J Varma1, Joseph Moran2.   

Abstract

Life builds its molecules from carbon dioxide (CO2) and breaks them back down again through the intermediacy of just five metabolites, which are the universal hubs of biochemistry1. However, it is unclear how core biological metabolism began and why it uses the intermediates, reactions and pathways that it does. Here we describe a purely chemical reaction network promoted by ferrous iron, in which aqueous pyruvate and glyoxylate-two products of abiotic CO2 reduction2-4-build up 9 of the 11 intermediates of the biological Krebs (or tricarboxylic acid) cycle, including all 5 universal metabolic precursors. The intermediates simultaneously break down to CO2 in a life-like regime that resembles biological anabolism and catabolism5. Adding hydroxylamine6-8 and metallic iron into the system produces four biological amino acids in a manner that parallels biosynthesis. The observed network overlaps substantially with the Krebs and glyoxylate cycles9,10, and may represent a prebiotic precursor to these core metabolic pathways.

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Year:  2019        PMID: 31043728      PMCID: PMC6517266          DOI: 10.1038/s41586-019-1151-1

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  27 in total

1.  Speculations on the origin and evolution of metabolism.

Authors:  H Hartman
Journal:  J Mol Evol       Date:  1975-03-24       Impact factor: 2.395

Review 2.  Universality in intermediary metabolism.

Authors:  Eric Smith; Harold J Morowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-30       Impact factor: 11.205

Review 3.  The evolution and future of Earth's nitrogen cycle.

Authors:  Donald E Canfield; Alexander N Glazer; Paul G Falkowski
Journal:  Science       Date:  2010-10-08       Impact factor: 47.728

4.  Remnants of an Ancient Metabolism without Phosphate.

Authors:  Joshua E Goldford; Hyman Hartman; Temple F Smith; Daniel Segrè
Journal:  Cell       Date:  2017-03-02       Impact factor: 41.582

Review 5.  On the origin of biochemistry at an alkaline hydrothermal vent.

Authors:  William Martin; Michael J Russell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

Review 6.  The compositional and evolutionary logic of metabolism.

Authors:  Rogier Braakman; Eric Smith
Journal:  Phys Biol       Date:  2012-12-12       Impact factor: 2.583

7.  Iron catalysis at the origin of life.

Authors:  Eloi Camprubi; Sean F Jordan; Rafaela Vasiliadou; Nick Lane
Journal:  IUBMB Life       Date:  2017-05-03       Impact factor: 3.885

8.  Prebiotic synthesis of amino acids from formaldehyde and hydroxylamine in a modified sea medium.

Authors:  M Sakurai; H Yanagawa
Journal:  Orig Life       Date:  1984

9.  The implausibility of metabolic cycles on the prebiotic Earth.

Authors:  Leslie E Orgel
Journal:  PLoS Biol       Date:  2008-01       Impact factor: 8.029

10.  Non-enzymatic glycolysis and pentose phosphate pathway-like reactions in a plausible Archean ocean.

Authors:  Markus A Keller; Alexandra V Turchyn; Markus Ralser
Journal:  Mol Syst Biol       Date:  2014-04-25       Impact factor: 11.429

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  52 in total

1.  Pyruvate secretion by oral streptococci modulates hydrogen peroxide dependent antagonism.

Authors:  Sylvio Redanz; Puthayalai Treerat; Rong Mu; Ulrike Redanz; Zhengzhong Zou; Dipankar Koley; Justin Merritt; Jens Kreth
Journal:  ISME J       Date:  2020-01-27       Impact factor: 10.302

2.  A possible non-biological reaction framework for metabolic processes on early Earth.

Authors:  Robert Pascal
Journal:  Nature       Date:  2019-05       Impact factor: 49.962

3.  Probing complexity: thermodynamics and computational mechanics approaches to origins studies.

Authors:  Stuart J Bartlett; Patrick Beckett
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

4.  Prebiotic synthesis of α-amino acids and orotate from α-ketoacids potentiates transition to extant metabolic pathways.

Authors:  Sunil Pulletikurti; Mahipal Yadav; Greg Springsteen; Ramanarayanan Krishnamurthy
Journal:  Nat Chem       Date:  2022-07-28       Impact factor: 24.274

Review 5.  Physiological limits to life in anoxic subseafloor sediment.

Authors:  William D Orsi; Bernhard Schink; Wolfgang Buckel; William F Martin
Journal:  FEMS Microbiol Rev       Date:  2020-03-01       Impact factor: 16.408

6.  A continuous reaction network that produces RNA precursors.

Authors:  Ruiqin Yi; Quoc Phuong Tran; Sarfaraz Ali; Isao Yoda; Zachary R Adam; H James Cleaves; Albert C Fahrenbach
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-02       Impact factor: 11.205

7.  Membranes Composed of Lipopeptides and Liponucleobases Inspired Protolife Evolution.

Authors:  Gordon D Sproul
Journal:  Orig Life Evol Biosph       Date:  2019-12-27       Impact factor: 1.950

8.  Reductive amination of α-Ketoglutarate in metabolite extracts results in glutamate overestimation.

Authors:  Elizabeth K Wiese; Sadae Hitosugi; Sarah A Buhrow; Sharon T Loa; Annapoorna Sreedhar; Joel M Reid; Wilson I Gonsalves; Taro Hitosugi
Journal:  J Chromatogr A       Date:  2020-04-27       Impact factor: 4.759

9.  An essay on the nominal vs. real definitions of aging.

Authors:  Aleksei G Golubev
Journal:  Biogerontology       Date:  2021-06-06       Impact factor: 4.277

10.  A robotic prebiotic chemist probes long term reactions of complexifying mixtures.

Authors:  Silke Asche; Geoffrey J T Cooper; Graham Keenan; Cole Mathis; Leroy Cronin
Journal:  Nat Commun       Date:  2021-06-10       Impact factor: 14.919

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