Literature DB >> 31040182

The HIRA histone chaperone complex subunit UBN1 harbors H3/H4- and DNA-binding activity.

M Daniel Ricketts1,2, Nirmalya Dasgupta3, Jiayi Fan1, Joseph Han1,4, Morgan Gerace1, Yong Tang5, Ben E Black1,6, Peter D Adams3, Ronen Marmorstein7,2,4,5,6.   

Abstract

The HIRA histone chaperone complex is composed of the proteins HIRA, UBN1, and CABIN1 and cooperates with the histone chaperone ASF1a to specifically bind and deposit H3.3/H4 into chromatin. We recently reported that the UBN1 Hpc2-related domain (HRD) specifically binds to H3.3/H4 over H3.1/H4. However, the mechanism for HIRA complex deposition of H3.3/H4 into nucleosomes remains unclear. Here, we characterize a central region of UBN1 (UBN1 middle domain) that is evolutionarily conserved and predicted to have helical secondary structure. We report that the UBN1 middle domain has dimer formation activity and binds to H3/H4 in a manner that does not discriminate between H3.1 and H3.3. We additionally identify a nearby DNA-binding domain in UBN1, located between the UBN1 HRD and middle domain, which binds DNA through electrostatic contacts involving several conserved lysine residues. Together, these observations suggest a mechanism for HIRA-mediated H3.3/H4 deposition whereby UBN1 associates with DNA and dimerizes to mediate formation of an (H3.3/H4)2 heterotetramer prior to chromatin deposition.
© 2019 Ricketts et al.

Entities:  

Keywords:  DNA-binding protein; chromatin; epigenetics; histone; histone chaperone

Mesh:

Substances:

Year:  2019        PMID: 31040182      PMCID: PMC6556585          DOI: 10.1074/jbc.RA119.007480

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  46 in total

1.  ASF1 binds to a heterodimer of histones H3 and H4: a two-step mechanism for the assembly of the H3-H4 heterotetramer on DNA.

Authors:  Christine M English; Nasib K Maluf; Brian Tripet; Mair E A Churchill; Jessica K Tyler
Journal:  Biochemistry       Date:  2005-10-25       Impact factor: 3.162

2.  Rapid PCR site-directed mutagenesis.

Authors:  M P Weiner; G L Costa
Journal:  PCR Methods Appl       Date:  1994-12

3.  Dimerization of the largest subunit of chromatin assembly factor 1: importance in vitro and during Xenopus early development.

Authors:  J P Quivy; P Grandi; G Almouzni
Journal:  EMBO J       Date:  2001-04-17       Impact factor: 11.598

4.  Structure of a human ASF1a-HIRA complex and insights into specificity of histone chaperone complex assembly.

Authors:  Yong Tang; Maxim V Poustovoitov; Kehao Zhao; Megan Garfinkel; Adrian Canutescu; Roland Dunbrack; Peter D Adams; Ronen Marmorstein
Journal:  Nat Struct Mol Biol       Date:  2006-09-17       Impact factor: 15.369

Review 5.  Histone chaperones in nucleosome assembly and human disease.

Authors:  Rebecca J Burgess; Zhiguo Zhang
Journal:  Nat Struct Mol Biol       Date:  2013-01       Impact factor: 15.369

6.  Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis.

Authors:  Hideaki Tagami; Dominique Ray-Gallet; Geneviève Almouzni; Yoshihiro Nakatani
Journal:  Cell       Date:  2004-01-09       Impact factor: 41.582

7.  Human UBN1 is an ortholog of yeast Hpc2p and has an essential role in the HIRA/ASF1a chromatin-remodeling pathway in senescent cells.

Authors:  Gowrishankar Banumathy; Neeta Somaiah; Rugang Zhang; Yong Tang; Jason Hoffmann; Mark Andrake; Hugo Ceulemans; David Schultz; Ronen Marmorstein; Peter D Adams
Journal:  Mol Cell Biol       Date:  2008-11-24       Impact factor: 4.272

8.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

9.  Structure of the quaternary complex of histone H3-H4 heterodimer with chaperone ASF1 and the replicative helicase subunit MCM2.

Authors:  Hong Wang; Mingzhu Wang; Na Yang; Rui-Ming Xu
Journal:  Protein Cell       Date:  2015-09       Impact factor: 14.870

10.  Structure-function studies of histone H3/H4 tetramer maintenance during transcription by chaperone Spt2.

Authors:  Shoudeng Chen; Anne Rufiange; Hongda Huang; Kanagalaghatta R Rajashankar; Amine Nourani; Dinshaw J Patel
Journal:  Genes Dev       Date:  2015-06-15       Impact factor: 11.361

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