Literature DB >> 31036298

Recent advances in computational studies of GPCR-G protein interactions.

Jinan Wang1, Yinglong Miao2.   

Abstract

Protein-protein interactions are key in cellular signaling. G protein-coupled receptors (GPCRs), the largest superfamily of human membrane proteins, are able to transduce extracellular signals (e.g., hormones and neurotransmitters) to intracellular proteins, in particular the G proteins. Since GPCRs serve as primary targets of ~1/3 of currently marketed drugs, it is important to understand mechanisms of GPCR signaling in order to design selective and potent drug molecules. This chapter focuses on recent advances in computational studies of the GPCR-G protein interactions using bioinformatics, protein-protein docking and molecular dynamics simulation approaches.
© 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bioinformatics; GPCR-G protein interactions; Molecular dynamics; Protein-protein docking; Protein-protein interactions

Mesh:

Substances:

Year:  2019        PMID: 31036298      PMCID: PMC6986689          DOI: 10.1016/bs.apcsb.2018.11.011

Source DB:  PubMed          Journal:  Adv Protein Chem Struct Biol        ISSN: 1876-1623            Impact factor:   3.507


  105 in total

1.  Studies on the interactions between β2 adrenergic receptor and Gs protein by molecular dynamics simulations.

Authors:  Zhiwei Feng; Tingjun Hou; Youyong Li
Journal:  J Chem Inf Model       Date:  2012-03-29       Impact factor: 4.956

2.  CAPRI: a Critical Assessment of PRedicted Interactions.

Authors:  Joël Janin; Kim Henrick; John Moult; Lynn Ten Eyck; Michael J E Sternberg; Sandor Vajda; Ilya Vakser; Shoshana J Wodak
Journal:  Proteins       Date:  2003-07-01

Review 3.  A closer look into G protein coupled receptor activation: X-ray crystallography and long-scale molecular dynamics simulations.

Authors:  S Vanni; U Rothlisberger
Journal:  Curr Med Chem       Date:  2012       Impact factor: 4.530

Review 4.  Structural features of the G-protein/GPCR interactions.

Authors:  Irina S Moreira
Journal:  Biochim Biophys Acta       Date:  2013-09-07

5.  Single amino acid substitutions and deletions that alter the G protein coupling properties of the V2 vasopressin receptor identified in yeast by receptor random mutagenesis.

Authors:  I Erlenbach; E Kostenis; C Schmidt; C Serradeil-Le Gal; D Raufaste; M E Dumont; M H Pausch; J Wess
Journal:  J Biol Chem       Date:  2001-05-25       Impact factor: 5.157

6.  Ligand-specific interactions modulate kinetic, energetic, and mechanical properties of the human β2 adrenergic receptor.

Authors:  Michael Zocher; Juan J Fung; Brian K Kobilka; Daniel J Müller
Journal:  Structure       Date:  2012-06-28       Impact factor: 5.006

7.  The dynamic process of β(2)-adrenergic receptor activation.

Authors:  Rie Nygaard; Yaozhong Zou; Ron O Dror; Thomas J Mildorf; Daniel H Arlow; Aashish Manglik; Albert C Pan; Corey W Liu; Juan José Fung; Michael P Bokoch; Foon Sun Thian; Tong Sun Kobilka; David E Shaw; Luciano Mueller; R Scott Prosser; Brian K Kobilka
Journal:  Cell       Date:  2013-01-31       Impact factor: 41.582

8.  Helix dipole movement and conformational variability contribute to allosteric GDP release in Galphai subunits.

Authors:  Anita M Preininger; Michael A Funk; William M Oldham; Scott M Meier; Christopher A Johnston; Suraj Adhikary; Adam J Kimple; David P Siderovski; Heidi E Hamm; Tina M Iverson
Journal:  Biochemistry       Date:  2009-03-31       Impact factor: 3.162

9.  Investigating allosteric effects on the functional dynamics of β2-adrenergic ternary complexes with enhanced-sampling simulations.

Authors:  Noureldin Saleh; Giorgio Saladino; Francesco Luigi Gervasio; Timothy Clark
Journal:  Chem Sci       Date:  2017-03-24       Impact factor: 9.825

10.  Mutation of tyrosine-141 inhibits insulin-promoted tyrosine phosphorylation and increased responsiveness of the human beta 2-adrenergic receptor.

Authors:  M Valiquette; S Parent; T P Loisel; M Bouvier
Journal:  EMBO J       Date:  1995-11-15       Impact factor: 11.598

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  2 in total

1.  Mechanistic Insights into Specific G Protein Interactions with Adenosine Receptors.

Authors:  Jinan Wang; Yinglong Miao
Journal:  J Phys Chem B       Date:  2019-07-22       Impact factor: 2.991

Review 2.  Strategies towards Targeting Gαi/s Proteins: Scanning of Protein-Protein Interaction Sites To Overcome Inaccessibility.

Authors:  Britta Nubbemeyer; Anna Pepanian; Ajay Abisheck Paul George; Diana Imhof
Journal:  ChemMedChem       Date:  2021-03-22       Impact factor: 3.466

  2 in total

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