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Literature DB >> 31033079

DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions.

Lucie Zinger¹, Aurélie Bonin², Inger G Alsos³, Miklós Bálint^4,5, Holly Bik⁶, Frédéric Boyer², Anthony A Chariton⁷, Simon Creer⁸, Eric Coissac², Bruce E Deagle⁹, Marta De Barba², Ian A Dickie¹⁰, Alex J Dumbrell¹¹, Gentile Francesco Ficetola^2,12, Noah Fierer^13,14, Luca Fumagalli¹⁵, M Thomas P Gilbert^16,17, Simon Jarman^18,19, Ari Jumpponen²⁰, Håvard Kauserud²¹, Ludovic Orlando^22,23, Johan Pansu^7,24,25, Jan Pawlowski^26,27, Leho Tedersoo²⁸, Philip Francis Thomsen²⁹, Eske Willerslev^23,30,31, Pierre Taberlet^2,3.

Abstract

Keywords: data quality; environmental DNA; experimental controls; replication

Mesh：

Substances：
DNA

Year: 2019 PMID： 31033079 DOI： 10.1111/mec.15060

Source DB: PubMed Journal: Mol Ecol ISSN： 0962-1083 Impact factor: 6.185

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Cited

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39 in total

1. Soil Microbial Communities in Diverse Agroecosystems Exposed to the Herbicide Glyphosate.

Authors: Ryan M Kepler; Dietrich J Epp Schmidt; Stephanie A Yarwood; Michel A Cavigelli; Krishna N Reddy; Stephen O Duke; Carl A Bradley; Martin M Williams; Jeffery S Buyer; Jude E Maul
Journal: Appl Environ Microbiol Date: 2020-02-18 Impact factor: 4.792

2. Application of the mushroom volatile 1-octen-3-ol to suppress a morel disease caused by Paecilomyces penicillatus.

Authors: Yang Yu; Tianhai Liu; Lixu Liu; Ying Chen; Jie Tang; Weihong Peng; Hao Tan
Journal: Appl Microbiol Biotechnol Date: 2022-06-27 Impact factor: 4.813

3. Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods.

Authors: Paula Arribas; Carmelo Andújar; Kristine Bohmann; Jeremy R deWaard; Evan P Economo; Vasco Elbrecht; Stefan Geisen; Marta Goberna; Henrik Krehenwinkel; Vojtech Novotny; Lucie Zinger; Thomas J Creedy; Emmanouil Meramveliotakis; Víctor Noguerales; Isaac Overcast; Hélène Morlon; Anna Papadopoulou; Alfried P Vogler; Brent C Emerson
Journal: Gigascience Date: 2022-07-19 Impact factor: 7.658

4. Comparison of traditional and DNA metabarcoding samples for monitoring tropical soil arthropods (Formicidae, Collembola and Isoptera).

Authors: Yves Basset; Mehrdad Hajibabaei; Michael T G Wright; Anakena M Castillo; David A Donoso; Simon T Segar; Daniel Souto-Vilarós; Dina Y Soliman; Tomas Roslin; M Alex Smith; Greg P A Lamarre; Luis F De León; Thibaud Decaëns; José G Palacios-Vargas; Gabriela Castaño-Meneses; Rudolf H Scheffrahn; Marleny Rivera; Filonila Perez; Ricardo Bobadilla; Yacksecari Lopez; José Alejandro Ramirez Silva; Maira Montejo Cruz; Angela Arango Galván; Héctor Barrios
Journal: Sci Rep Date: 2022-06-24 Impact factor: 4.996

Review 5. Ecosystem-specific microbiota and microbiome databases in the era of big data.

Authors: Victor Lobanov; Angélique Gobet; Alyssa Joyce
Journal: Environ Microbiome Date: 2022-07-16

6. Build Your Own Mushroom Soil: Microbiota Succession and Nutritional Accumulation in Semi-Synthetic Substratum Drive the Fructification of a Soil-Saprotrophic Morel.

Authors: Hao Tan; Yang Yu; Jie Tang; Tianhai Liu; Renyun Miao; Zhongqian Huang; Francis M Martin; Weihong Peng
Journal: Front Microbiol Date: 2021-05-24 Impact factor: 5.640

7. Improved Microbial Community Characterization of 16S rRNA via Metagenome Hybridization Capture Enrichment.

Authors: Megan S Beaudry; Jincheng Wang; Troy J Kieran; Jesse Thomas; Natalia J Bayona-Vásquez; Bei Gao; Alison Devault; Brian Brunelle; Kun Lu; Jia-Sheng Wang; Olin E Rhodes; Travis C Glenn
Journal: Front Microbiol Date: 2021-04-27 Impact factor: 5.640