Literature DB >> 31032838

CANCROX: a cross-species cancer therapy database.

Paulo Muniz de Ávila1,2, Diego Cesar Valente E Silva1,3, Paulo Cesar de Melo Bernardo1,3, Ramon Gustavo Teodoro Marques da Silva1,2, Ana Lúcia Fachin1,4, Mozart Marins1,4, Edilson Carlos Caritá1,5.   

Abstract

Cancer comprises a set of more than 200 diseases resulting from the uncontrolled growth of cells that invade tissues and organs, which can spread to other regions of the body. The types of cancer found in humans are also described in animal models, a fact that has raised the interest of the scientific community in comparative oncology studies. In this study, bioinformatics tools were used to implement a computational model that uses text mining and natural language processing to construct a reference database that relates human and canine genes potentially associated with cancer, defining genetic pathways and information about cancer and cancer therapies. The CANCROX reference database was constructed by processing the scientific literature and lists more than 1300 drugs and therapies used to treat cancer, in addition to over 10 000 combinations of these drugs, including 40 types of cancer. A user-friendly interface was developed that enables researchers to search for different types of information about therapies, drug combinations, genes and types of cancer. In addition, data visualization tools allow to explore and relate different drugs and therapies for the treatment of cancer, providing information for groups studying animal models, in this case the dog, as well as groups studying cancer in humans.
© The Author(s) 2019. Published by Oxford University Press.

Entities:  

Mesh:

Year:  2019        PMID: 31032838      PMCID: PMC6482323          DOI: 10.1093/database/baz044

Source DB:  PubMed          Journal:  Database (Oxford)        ISSN: 1758-0463            Impact factor:   3.451


  25 in total

1.  The dog as a cancer model.

Authors:  Chand Khanna; Kerstin Lindblad-Toh; David Vail; Cheryl London; Philip Bergman; Lisa Barber; Matthew Breen; Barbara Kitchell; Elizabeth McNeil; Jaime F Modiano; Steven Niemi; Kenine E Comstock; Elaine Ostrander; Susan Westmoreland; Stephen Withrow
Journal:  Nat Biotechnol       Date:  2006-09       Impact factor: 54.908

Review 2.  The canine genome.

Authors:  Elaine A Ostrander; Robert K Wayne
Journal:  Genome Res       Date:  2005-12       Impact factor: 9.043

3.  Guidelines for the welfare and use of animals in cancer research.

Authors:  P Workman; E O Aboagye; F Balkwill; A Balmain; G Bruder; D J Chaplin; J A Double; J Everitt; D A H Farningham; M J Glennie; L R Kelland; V Robinson; I J Stratford; G M Tozer; S Watson; S R Wedge; S A Eccles
Journal:  Br J Cancer       Date:  2010-05-25       Impact factor: 7.640

4.  Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt.

Authors:  Steffen Durinck; Paul T Spellman; Ewan Birney; Wolfgang Huber
Journal:  Nat Protoc       Date:  2009-07-23       Impact factor: 13.491

Review 5.  Zebrafish as a cancer model.

Authors:  Harma Feitsma; Edwin Cuppen
Journal:  Mol Cancer Res       Date:  2008-05       Impact factor: 5.852

6.  The rate of growth in scientific publication and the decline in coverage provided by Science Citation Index.

Authors:  Peder Olesen Larsen; Markus von Ins
Journal:  Scientometrics       Date:  2010-03-10       Impact factor: 3.238

7.  Genenames.org: the HGNC resources in 2015.

Authors:  Kristian A Gray; Bethan Yates; Ruth L Seal; Mathew W Wright; Elspeth A Bruford
Journal:  Nucleic Acids Res       Date:  2014-10-31       Impact factor: 19.160

8.  Ensembl 2016.

Authors:  Andrew Yates; Wasiu Akanni; M Ridwan Amode; Daniel Barrell; Konstantinos Billis; Denise Carvalho-Silva; Carla Cummins; Peter Clapham; Stephen Fitzgerald; Laurent Gil; Carlos García Girón; Leo Gordon; Thibaut Hourlier; Sarah E Hunt; Sophie H Janacek; Nathan Johnson; Thomas Juettemann; Stephen Keenan; Ilias Lavidas; Fergal J Martin; Thomas Maurel; William McLaren; Daniel N Murphy; Rishi Nag; Michael Nuhn; Anne Parker; Mateus Patricio; Miguel Pignatelli; Matthew Rahtz; Harpreet Singh Riat; Daniel Sheppard; Kieron Taylor; Anja Thormann; Alessandro Vullo; Steven P Wilder; Amonida Zadissa; Ewan Birney; Jennifer Harrow; Matthieu Muffato; Emily Perry; Magali Ruffier; Giulietta Spudich; Stephen J Trevanion; Fiona Cunningham; Bronwen L Aken; Daniel R Zerbino; Paul Flicek
Journal:  Nucleic Acids Res       Date:  2015-12-19       Impact factor: 16.971

9.  Cancer Hallmarks Analytics Tool (CHAT): a text mining approach to organize and evaluate scientific literature on cancer.

Authors:  Simon Baker; Imran Ali; Ilona Silins; Sampo Pyysalo; Yufan Guo; Johan Högberg; Ulla Stenius; Anna Korhonen
Journal:  Bioinformatics       Date:  2017-12-15       Impact factor: 6.937

10.  DGIdb 2.0: mining clinically relevant drug-gene interactions.

Authors:  Alex H Wagner; Adam C Coffman; Benjamin J Ainscough; Nicholas C Spies; Zachary L Skidmore; Katie M Campbell; Kilannin Krysiak; Deng Pan; Joshua F McMichael; James M Eldred; Jason R Walker; Richard K Wilson; Elaine R Mardis; Malachi Griffith; Obi L Griffith
Journal:  Nucleic Acids Res       Date:  2015-11-03       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.