Literature DB >> 31031001

Marine DNA Viral Macro- and Microdiversity from Pole to Pole.

Ann C Gregory1, Ahmed A Zayed1, Nádia Conceição-Neto2, Ben Temperton3, Ben Bolduc1, Adriana Alberti4, Mathieu Ardyna5, Ksenia Arkhipova6, Margaux Carmichael7, Corinne Cruaud8, Céline Dimier9, Guillermo Domínguez-Huerta1, Joannie Ferland10, Stefanie Kandels11, Yunxiao Liu1, Claudie Marec10, Stéphane Pesant12, Marc Picheral13, Sergey Pisarev14, Julie Poulain4, Jean-Éric Tremblay10, Dean Vik1, Marcel Babin10, Chris Bowler15, Alexander I Culley16, Colomban de Vargas7, Bas E Dutilh17, Daniele Iudicone18, Lee Karp-Boss19, Simon Roux1, Shinichi Sunagawa20, Patrick Wincker4, Matthew B Sullivan21.   

Abstract

Microbes drive most ecosystems and are modulated by viruses that impact their lifespan, gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community diversity remain difficult to assess due to classification issues and few reference genomes. Here, we establish an ∼12-fold expanded global ocean DNA virome dataset of 195,728 viral populations, now including the Arctic Ocean, and validate that these populations form discrete genotypic clusters. Meta-community analyses revealed five ecological zones throughout the global ocean, including two distinct Arctic regions. Across the zones, local and global patterns and drivers in viral community diversity were established for both macrodiversity (inter-population diversity) and microdiversity (intra-population genetic variation). These patterns sometimes, but not always, paralleled those from macro-organisms and revealed temperate and tropical surface waters and the Arctic as biodiversity hotspots and mechanistic hypotheses to explain them. Such further understanding of ocean viruses is critical for broader inclusion in ecosystem models.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  community ecology; diversity gradients; marine biology; metagenomics; population ecology; species; viruses

Mesh:

Substances:

Year:  2019        PMID: 31031001      PMCID: PMC6525058          DOI: 10.1016/j.cell.2019.03.040

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  95 in total

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Authors:  Alexander I Culley; Andrew S Lang; Curtis A Suttle
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Authors:  A Randall Hughes; Brian D Inouye; Marc T J Johnson; Nora Underwood; Mark Vellend
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Journal:  Science       Date:  2016-09-30       Impact factor: 47.728

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7.  How variation between individuals affects species coexistence.

Authors:  Simon P Hart; Sebastian J Schreiber; Jonathan M Levine
Journal:  Ecol Lett       Date:  2016-06-02       Impact factor: 9.492

8.  UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.

Authors:  Baris E Suzek; Yuqi Wang; Hongzhan Huang; Peter B McGarvey; Cathy H Wu
Journal:  Bioinformatics       Date:  2014-11-13       Impact factor: 6.937

9.  Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics.

Authors:  Sonny T M Lee; Stacy A Kahn; Tom O Delmont; Alon Shaiber; Özcan C Esen; Nathaniel A Hubert; Hilary G Morrison; Dionysios A Antonopoulos; David T Rubin; A Murat Eren
Journal:  Microbiome       Date:  2017-05-04       Impact factor: 14.650

10.  The evolution of viruses in multi-host fitness landscapes.

Authors:  Santiago F Elena; Patricia Agudelo-Romero; Jasna Lalić
Journal:  Open Virol J       Date:  2009-03-19
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