Literature DB >> 31029862

Decoding and analysis of organelle genomes of Indian tea (Camellia assamica) for phylogenetic confirmation.

Hukam C Rawal1, P Mohan Kumar2, Biswajit Bera2, Nagendra Kumar Singh1, Tapan Kumar Mondal3.   

Abstract

The NCBI database has >15 chloroplast (cp) genome sequences available for different Camellia species but none for C. assamica. There is no report of any mitochondrial (mt) genome in the Camellia genus or Theaceae family. With the strong believes that these organelle genomes can play a great tool for taxonomic and phylogenetic analysis, we successfully assembled and analyzed cp and mt genome of C. assamica. We assembled the complete mt genome of C. assamica in a single circular contig of 707,441 bp length comprising of a total of 66 annotated genes, including 35 protein-coding genes, 29 tRNAs and two rRNAs. The first ever cp genome of C. assamica resulted in a circular contig of 157,353 bp length with a typical quadripartite structure. Phylogenetic analysis based on these organelle genomes showed that C. assamica was closely related to C. sinensis and C. leptophylla. It also supports Caryophyllales as Superasterids.
Copyright © 2019. Published by Elsevier Inc.

Entities:  

Keywords:  Asterids; Chloroplast; Mitochondria; Phylogeny; Tea

Year:  2019        PMID： 31029862     DOI： 10.1016/j.ygeno.2019.04.018

Source DB:  PubMed          Journal:  Genomics        ISSN： 0888-7543            Impact factor:   5.736


  7 in total

1.  Characterization and phylogenetic analysis of the complete mitochondrial genome sequence of Diospyros oleifera, the first representative from the family Ebenaceae.

Authors:  Yang Xu; Yi Dong; Wenqiang Cheng; Kaiyun Wu; Haidong Gao; Lei Liu; Lei Xu; Bangchu Gong
Journal:  Heliyon       Date:  2022-07-06

2.  Sequencing the organelle genomes of Bougainvillea spectabilis and Mirabilis jalapa (Nyctaginaceae).

Authors:  Fang Yuan; Xiaozhong Lan
Journal:  BMC Genom Data       Date:  2022-04-13

3.  Comparative Analysis of the Complete Chloroplast Genome of Mainland Aster spathulifolius and Other Aster Species.

Authors:  Swati Tyagi; Jae-A Jung; Jung Sun Kim; So Youn Won
Journal:  Plants (Basel)       Date:  2020-04-29

4.  Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea.

Authors:  Hukam C Rawal; Sangeeta Borchetia; Biswajit Bera; S Soundararajan; R Victor J Ilango; Anoop Kumar Barooah; Tilak Raj Sharma; Nagendra Kumar Singh; Tapan Kumar Mondal
Journal:  Sci Rep       Date:  2021-01-08       Impact factor: 4.379

5.  Comparative chloroplast genomes: insights into the evolution of the chloroplast genome of Camellia sinensis and the phylogeny of Camellia.

Authors:  Li Li; Yunfei Hu; Min He; Bo Zhang; Wei Wu; Pumo Cai; Da Huo; Yongcong Hong
Journal:  BMC Genomics       Date:  2021-02-26       Impact factor: 3.969

6.  Comparative Analysis of Codon Bias in the Chloroplast Genomes of Theaceae Species.

Authors:  Zhanjun Wang; Qianwen Cai; Yue Wang; Minhui Li; Chenchen Wang; Zhaoxia Wang; Chunyan Jiao; Congcong Xu; Hongyan Wang; Zhaoliang Zhang
Journal:  Front Genet       Date:  2022-03-10       Impact factor: 4.599

7.  TeaMiD: a comprehensive database of simple sequence repeat markers of tea.

Authors:  Himanshu Dubey; Hukam C Rawal; Megha Rohilla; Urvashi Lama; P Mohan Kumar; Tanoy Bandyopadhyay; Madhurjya Gogoi; Nagendra Kumar Singh; Tapan Kumar Mondal
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451
  7 in total

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