| Literature DB >> 31024866 |
Pooja Purswani1, Cristina Adelia Meehan2, Hye Sun Kuehn3, Yenhui Chang1, Joseph F Dasso2,4, Anna K Meyer1, Boglarka Ujhazi2, Krisztian Csomos2, David Lindsay5, Taylor Alberdi2, Sonia Joychan6, Jessica Trotter2, Carla Duff2, Maryssa Ellison2, Jack Bleesing7, Attila Kumanovics8,9, Anne M Comeau10, Jaime E Hale11, Luigi D Notarangelo12, Troy R Torgersen13, Hans D Ochs13, Panida Sriaroon1,2, Benjamin Oshrine1, Aleksandra Petrovic13, Sergio D Rosenzweig3, Jennifer W Leiding1,2, Jolan E Walter1,2,14.
Abstract
In the era of newborn screening (NBS) for severe combined immunodeficiency (SCID) and the possibility of gene therapy (GT), it is important to link SCID phenotype to the underlying genetic disease. In western countries, X-linked interleukin 2 receptor gamma chain (IL2RG) and adenosine deaminase (ADA) deficiency SCID are two of the most common types of SCID and can be treated by GT. As a challenge, both IL2RG and ADA genes are highly polymorphic and a gene-based diagnosis may be difficult if the variant is of unknown significance or if it is located in non-coding areas of the genes that are not routinely evaluated with exon-based genetic testing (e.g., introns, promoters, and the 5'and 3' untranslated regions). Therefore, it is important to extend evaluation to non-coding areas of a SCID gene if the exon-based sequencing is inconclusive and there is strong suspicion that a variant in that gene is the cause for disease. Functional studies are often required in these cases to confirm a pathogenic variant. We present here two unique examples of X-linked SCID with variable immune phenotypes, where IL2R gamma chain expression was detected and no pathogenic variant was identified on initial genetic testing. Pathogenic IL2RG variants were subsequently confirmed by functional assay of gamma chain signaling and maternal X-inactivation studies. We propose that such tests can facilitate confirmation of suspected cases of X-linked SCID in newborns when initial genetic testing is inconclusive. Early identification of pathogenic IL2RG variants is especially important to ensure eligibility for gene therapy.Entities:
Keywords: X-linked severe combined immunodeficiency (SCID); functional assays; gamma chain signaling; interleukin 2 receptor gamma (IL2RG); maternal X-inactivation studies; newborn screening
Year: 2019 PMID: 31024866 PMCID: PMC6460992 DOI: 10.3389/fped.2019.00055
Source DB: PubMed Journal: Front Pediatr ISSN: 2296-2360 Impact factor: 3.418
Clinical history and immune phenotyping of patients A and B, and additional studies on family members.
| Clinical presentation at time of lab evaluation | asymptomatic | PJP pneumonia on steroids | ||
| Phenotype of SCID variant | T−/B+/NKlow | T+(CD8low)/B+/NKlow | ||
| TREC (copies/microliter) at birth* | 0 (L*) | 0 (L*) | >15 [Patient A NBS in Florida], | |
| Absolute lymphocyte (cells/μL) | 669 (L) | 1,596 (L) | >2,600 | |
| Absolute CD3 T (cells/μL) | 9 (L) | 1,062 (L) | >1,600 | |
| Absolute CD4 T (cells/μL) | 9 (L) | 1,043 | >1,000 | |
| Absolute CD8 T (cells/μL) | 7 (L) | 27 (L) | >400 | |
| Absolute CD19 B (cells/μL) | 450 (L) | 365 (L) | >600 | |
| Absolute CD56 NK (cells/μL) | 61 (L) | 145 (L) | >200 | |
| CD4+CD45RA+ naïve T (cells/μL), (% of total CD4) | 1 (11%) (L) | 0 (L) | >50% of total CD4 | |
| CD8+CD45RA+ naïve T (cells/μL), (% of total CD8) | 2 (30%) (L) | 0 (L) | >50% of total CD8 | |
| CD3+ T cell proliferation to mitogens | PHA | 0.9% (L) | 7.1% (L) | >58.4% |
| PWM | 11.5% | 4.1% | >3.4% | |
| T cell proliferation with interleukins | anti-CD3 | |||
| anti-CD3/CD28 | n.a. | Absent | ||
| anti-CD3/IL-2 | ||||
| CD132 (common γ chain) expression | T cells | n.a. | 84% (L) | >99% |
| B cells | 87% | 84% | >58% | |
| NK cells | 71% (L) | 66% (L) | >84% | |
| CD132 signaling | absent | absent | ||
| Mother | PBMC | 76:24 | 85:15 (H) | <80:20 |
| Mother | T cells | 100:0 (H) | 100:0 (H) | <80:20 |
| 13-year-old sister | PBMC | 90:10 (H) | n.a. | <80:20 |
| 14-year-old sister | PBMC | 91:9 (H) | n.a. | <80:20 |
X-inactivation studies on peripheral blood mononuclear cells (PBMCs) were performed by Greenwood Genetics (Greenwood, SC). This study does not allow for distinguishing wild type (wt) or mutant alleles. X-inactivation studies in T cells at the NIH allowed for distinction between wt and mutant alleles (.
Figure 1Gene Map of IL2RG gene showing novel variants for patients A and B. (A) IL2RG cDNA map with sites of variants (indicated by arrows) found in patients A and B with X-linked SCID. Patient A has a novel hemizygous missense variant: c.G175C in exon 2 (p.E59Q), which was designated a variant of unknown significance. Patient B has a novel variant in a non-coding region of IL2RG: a deletion within the 3′ UTR (AA *307 *308). (B) Chromatogram of Sanger sequencing of the 3′ UTR of the IL2RG gene for patient B, his mother and a healthy control (HC). Sequencing reveals patient B and his mother (a carrier) have a 2 base pair deletion within the polyA signal sequence: AATAAA is changed to AATA, as indicated by the blue rectangles.
Figure 2Immune functional assays for interleukin receptor signaling in subsets of lymphocytes. (A) X chromosome inactivation (XCI) with (+) or without (−) Hpall. Hpall digests unmethylated alleles. The X chromosome that is active is under methylated, thus, once digested by Hpall, PCR amplification does not occur and band disappears. XCI in CD3+ T cells is skewed toward. (B) Histogram of T cell and monocyte response with STAT phosphorylation to several γc dependent (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and independent (IL-6, IFN-α, IFN-γ) cytokines in PBMCs of patient A. (C) Total lymphocyte response with STAT5 phosphorylation to IL-21 and IL-2 stimulation in patient A, patient B and a healthy control (unstimulated in red, stimulated in blue). (D) Level of CD132 (γc) expression on CD3+ T cells of patient B and a healthy control (patient unstimulated in green, patient stimulated in red, and healthy control in blue). Eighty-four percent of patient's cells expressed CD 132 when stimulated, however, mean fluorescence intensity was lower in patient than control. X inactivation and STAT phosphorylation studies in Figures 2A,B were performed by the Department of Laboratory Medicine, Clinical Center, National Institutes of Health (Bethesda, MD).
Figure 3T cell repertoire study. Spectratyping of CD3+ T cells for TCRβ was performed for patient B. The patient has essentially absent TCRVβ repertoire diversity (Cellular and Molecular Immunology Laboratory, Mayo Clinic). The majority of the 23 Vβ families assessed are completely absent and those that show the presence of T cell receptor Vβ families are profoundly oligoclonal (≤5 independent peaks). Patient in red, house-keeping gene (β-actin) in blue, and size marker in orange.