Literature DB >> 31024493

Corrigendum: Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.

Radhey S Gupta1, Brian Lo1, Jeen Son1.   

Abstract

[This corrects the article DOI: 10.3389/fmicb.2018.00067.].

Entities:  

Keywords:  Mycobacterium classification; abscessus-chelonae clade; conserved signature indels and signature proteins; fortuitum-vaccae clade; phylogenomic analysis; slow-growing and fast-growing mycobacteria; terrae clade; triviale clade

Year:  2019        PMID: 31024493      PMCID: PMC6465619          DOI: 10.3389/fmicb.2019.00714

Source DB:  PubMed          Journal:  Front Microbiol        ISSN: 1664-302X            Impact factor:   5.640


In the original article, there was an error. Based on the branching position of Mycobacterium vulneris (van Ingen et al., 2009) in different phylogenomic trees and on multiple identified molecular signatures that this species shared with a clade of rapid growing mycobacteria, we proposed a reclassification of M. vulneris, into a new genus, Mycolicibacterium, corresponding to a clade of rapid-growing mycobacteria. However, it was noted in our article that the branching of M. vulneris, which is a slow-growing species with rapid-growing mycobacteria, was anomalous. In a Frontiers commentary, Tortoli (2018) indicated that the genome sequence of M. vulneris, originally available in the NCBI genome database (accession CCBG00000000; Croce et al., 2014), was mislabeled and very likely corresponded to Mycobacterium porcinum (a rapid grower). Tortoli (2018) also reported the sequencing of the type strain of M. vulneris, DSM 45247T and this genome sequence (accession NCXM01000000) showed the branching of M. vulneris within the slow-growing group of mycobacteria, belonging to the genus Mycobacterium. Our own analysis with this new genome sequence also confirms the branching of M. vulneris within the delimited genus Mycobacterium, encompassing different slow-growing mycobacteria. As a result, the transfer of M. vulneris into the genus Mycolicibacterium as proposed in Table 11 of our article was incorrect as a direct result of the mislabeling of the available genome sequence for this species. To correct this error, we propose that the species Mycolicibacterium vulneris (Gupta et al., 2018) should be reinstated to its previous basonym Mycobacterium vulneris (van Ingen et al., 2009) and as part of the genus Mycobacterium (Gupta et al., 2018). The authors apologize for this error and state that this does not change the scientific conclusions of the article in any way.
  2 in total

1.  Multiplexed site-specific genome engineering in Mycolicibacterium neoaurum by Att/Int system.

Authors:  Ke Liu; Gui-Hong Lin; Kun Liu; Yong-Jun Liu; Xin-Yi Tao; Bei Gao; Ming Zhao; Dong-Zhi Wei; Feng-Qing Wang
Journal:  Synth Syst Biotechnol       Date:  2022-06-06

2.  Involvement of Transcription Elongation Factor GreA in Mycobacterium Viability, Antibiotic Susceptibility, and Intracellular Fitness.

Authors:  Siyuan Feng; Yan Liu; Wanfei Liang; Mohamed Abd El-Gawad El-Sayed Ahmed; Zihan Zhao; Cong Shen; Adam P Roberts; Lujie Liang; Liya Liao; Zhijuan Zhong; Zhaowang Guo; Yongqiang Yang; Xin Wen; Hongtao Chen; Guo-Bao Tian
Journal:  Front Microbiol       Date:  2020-03-23       Impact factor: 5.640

  2 in total

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