Literature DB >> 31022553

Enhancer long-range contacts: The multi-adaptor protein LDB1 is the tie that binds.

Guoyou Liu1, Ann Dean2.   

Abstract

The eukaryotic genome is organized at varying levels into chromosome territories, transcriptional compartments and topologically associating domains (TADs), which are architectural features largely shared between different cell types and across species. In contrast, within TADs, chromatin loops connect enhancers and their target genes to establish unique transcriptomes that distinguish cells and tissues from each other and underlie development and differentiation. How these tissue-specific and temporal stage-specific long-range contacts are formed and maintained is a fundamental question in biology. The widely expressed Lim domain binding 1 protein, LDB1, plays a critical role in connecting enhancers and genes by forming complexes with cell-type specificity across diverse developmental pathways including neurogenesis, cardiogenesis, retinogenesis and hematopoiesis. Here we review the multiple roles of LDB1 in cell fate determination and in chromatin loop formation, with an emphasis on mammalian systems, to illuminate how LDB1 functions in normal cells and in diseases such as cancer. Published by Elsevier B.V.

Entities:  

Keywords:  Chromatin; Development; Enhancers; Gene expression; LDB1; LIM proteins; Looping

Mesh:

Substances:

Year:  2019        PMID: 31022553     DOI: 10.1016/j.bbagrm.2019.04.003

Source DB:  PubMed          Journal:  Biochim Biophys Acta Gene Regul Mech        ISSN: 1874-9399            Impact factor:   4.490


  13 in total

1.  Enhancer looping protein LDB1 regulates hepatocyte gene expression by cooperating with liver transcription factors.

Authors:  Guoyou Liu; Lei Wang; Jürgen Wess; Ann Dean
Journal:  Nucleic Acids Res       Date:  2022-08-26       Impact factor: 19.160

2.  Hemogen/BRG1 cooperativity modulates promoter and enhancer activation during erythropoiesis.

Authors:  Xiang Guo; Yangu Zhao; Juhyun Kim; Ann Dean
Journal:  Blood       Date:  2022-06-16       Impact factor: 25.476

3.  LDB1 Enforces Stability on Direct and Indirect Oncoprotein Partners in Leukemia.

Authors:  Justin H Layer; Michael Christy; Lindsey Placek; Derya Unutmaz; Yan Guo; Utpal P Davé
Journal:  Mol Cell Biol       Date:  2020-05-28       Impact factor: 4.272

4.  Crystal structure of human LDB1 in complex with SSBP2.

Authors:  Hongyang Wang; Juhyun Kim; Zhizhi Wang; Xiao-Xue Yan; Ann Dean; Wenqing Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-31       Impact factor: 11.205

5.  [LIM-domain binding protein 2 regulated by m6A modification inhibits lung adenocarcinoma cell proliferation in vitro].

Authors:  D Zhai; G Wang; L Li; X Jia; G Zheng; J Yin
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2021-03-25

Review 6.  Weak interactions in higher-order chromatin organization.

Authors:  Omar L Kantidze; Sergey V Razin
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

7.  Rotational symmetry of the structured Chip/LDB-SSDP core module of the Wnt enhanceosome.

Authors:  Miha Renko; Marc Fiedler; Trevor J Rutherford; Jonas V Schaefer; Andreas Plückthun; Mariann Bienz
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

8.  N-terminal domain of the architectural protein CTCF has similar structural organization and ability to self-association in bilaterian organisms.

Authors:  Artem Bonchuk; Sofia Kamalyan; Sofia Mariasina; Konstantin Boyko; Vladimir Popov; Oksana Maksimenko; Pavel Georgiev
Journal:  Sci Rep       Date:  2020-02-14       Impact factor: 4.379

Review 9.  CG-NAP/Kinase Interactions Fine-Tune T Cell Functions.

Authors:  Navin Kumar Verma; Madhavi Latha Somaraju Chalasani; John D Scott; Dermot Kelleher
Journal:  Front Immunol       Date:  2019-11-12       Impact factor: 7.561

10.  SEUSS integrates transcriptional and epigenetic control of root stem cell organizer specification.

Authors:  Huawei Zhai; Xiaoyue Zhang; Yanrong You; Lihao Lin; Wenkun Zhou; Chuanyou Li
Journal:  EMBO J       Date:  2020-09-14       Impact factor: 11.598

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