Literature DB >> 31005754

Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging.

Florian Km Schur1.   

Abstract

Cryo-electron tomography (cryo-ET) provides unprecedented insights into the molecular constituents of biological environments. In combination with an image processing method called subtomogram averaging (STA), detailed 3D structures of biological molecules can be obtained in large, irregular macromolecular assemblies or in situ, without the need for purification. The contextual meta-information these methods also provide, such as a protein's location within its native environment, can then be combined with functional data. This allows the derivation of a detailed view on the physiological or pathological roles of proteins from the molecular to cellular level. Despite their tremendous potential in in situ structural biology, cryo-ET and STA have been restricted by methodological limitations, such as the low obtainable resolution. Exciting progress now allows one to reach unprecedented resolutions in situ, ranging in optimal cases beyond the nanometer barrier. Here, I review current frontiers and future challenges in routinely determining high-resolution structures in in situ environments using cryo-ET and STA.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Year:  2019        PMID: 31005754     DOI: 10.1016/j.sbi.2019.03.018

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  28 in total

1.  In situ cryo-electron tomography reveals filamentous actin within the microtubule lumen.

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Journal:  J Cell Biol       Date:  2020-09-07       Impact factor: 10.539

2.  Nanometer-Scale Molecular Mapping by Super-resolution Fluorescence Microscopy.

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Journal:  Methods Mol Biol       Date:  2022

Review 3.  Elusive structure of mammalian DGKs.

Authors:  Qianqian Ma; Lakshmi Srinivasan; Sandra B Gabelli; Daniel M Raben
Journal:  Adv Biol Regul       Date:  2021-12-02

4.  End-to-end robust joint unsupervised image alignment and clustering.

Authors:  Xiangrui Zeng; Gregory Howe; Min Xu
Journal:  Proc IEEE Int Conf Comput Vis       Date:  2021-10

5.  Reconstitution of kinetochore motility and microtubule dynamics reveals a role for a kinesin-8 in establishing end-on attachments.

Authors:  Julia R Torvi; Jonathan Wong; Daniel Serwas; Amir Moayed; David G Drubin; Georjana Barnes
Journal:  Elife       Date:  2022-07-05       Impact factor: 8.713

Review 6.  Structure and dynamics of photoreceptor sensory cilia.

Authors:  Theodore G Wensel; Valencia L Potter; Abigail Moye; Zhixian Zhang; Michael A Robichaux
Journal:  Pflugers Arch       Date:  2021-05-28       Impact factor: 3.657

7.  Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomography.

Authors:  Jitin Singla; Kate L White; Raymond C Stevens; Frank Alber
Journal:  J Struct Biol       Date:  2021-03-20       Impact factor: 3.234

8.  Neuropathy target esterase (NTE/PNPLA6) and organophosphorus compound-induced delayed neurotoxicity (OPIDN).

Authors:  Rudy J Richardson; John K Fink; Paul Glynn; Robert B Hufnagel; Galina F Makhaeva; Sanjeeva J Wijeyesakere
Journal:  Adv Neurotoxicol       Date:  2020-03-03

9.  Membrane imaging in the plant endomembrane system.

Authors:  Zhiqi Liu; Jiayang Gao; Yong Cui; Sven Klumpe; Yun Xiang; Philipp S Erdmann; Liwen Jiang
Journal:  Plant Physiol       Date:  2021-04-02       Impact factor: 8.340

Review 10.  Assessing the Role of Lipids in the Molecular Mechanism of Membrane Proteins.

Authors:  Léni Jodaitis; Thomas van Oene; Chloé Martens
Journal:  Int J Mol Sci       Date:  2021-07-06       Impact factor: 5.923

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