Literature DB >> 31004699

Whole genome sequencing and genome annotation of the wild edible mushroom, Russula griseocarnosa.

Fei Yu1, Jie Song2, Junfeng Liang3, Shengkun Wang2, Junkun Lu2.   

Abstract

Russula griseocarnosa is a species of edible ectomycorrhizal fungi with medicinal properties that grows in southern China. Total DNA was isolated from a fresh fruiting body of R. griseocarnosa and subjected to sequencing using Illumina Hiseq with the PacBio RS sequencing platform. Here, we present the 64.81 Mb draft genome map of R. griseocarnosa based on 471 scaffolds and 16,128 coding protein genes. The gene annotation of protein coding genes was used to obtain corresponding annotations by blastp. Phylogenetic analysis revealed a close evolutionary relationship of R. griseocarnosa to Heterobasidion irregulare and Stereum hirsutum in the core Russulales clade. The R. griseocarnosa genome encodes a repertoire of enzymes engaged in carbohydrate and polysaccharide metabolism, along with cytochrome P450s and secondary metabolite biosynthesis. The genome content of R. griseocarnosa provides insights into the genetic basis of its reported medicinal properties and serves as a reference for comparative genomics of fungi.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Phylogenetic; Russula griseocarnosa; Secondary metabolism; Whole genome

Year:  2019        PMID: 31004699     DOI: 10.1016/j.ygeno.2019.04.012

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  6 in total

1.  Data on the genome analysis of the wild edible mushroom, Russula griseocarnosa.

Authors:  Fei Yu; Junfeng Liang
Journal:  Data Brief       Date:  2019-07-19

2.  Bacterial Community Selection of Russula griseocarnosa Mycosphere Soil.

Authors:  Fei Yu; Jun-Feng Liang; Jie Song; Sheng-Kun Wang; Jun-Kun Lu
Journal:  Front Microbiol       Date:  2020-03-25       Impact factor: 5.640

3.  The complete mitochondrial genome of a wild edible mushroom, Russula griseocarnosa.

Authors:  Fei Yu; Yongjie Zhang; Jie Song; Junfeng Liang
Journal:  Mitochondrial DNA B Resour       Date:  2019-10-04       Impact factor: 0.658

Review 4.  Whole-Genome Sequencing and Comparative Genomics Analysis of the Wild Edible Mushroom (Gomphus purpuraceus) Provide Insights into Its Potential Food Application and Artificial Domestication.

Authors:  Yangyang Geng; Shixin Zhang; Ningxian Yang; Likang Qin
Journal:  Genes (Basel)       Date:  2022-09-10       Impact factor: 4.141

5.  Whole-genome sequence of a high-temperature edible mushroom Pleurotus giganteus (zhudugu).

Authors:  Hailong Yu; Meiyan Zhang; Yating Sun; Qiaozhen Li; Jianyu Liu; Chunyan Song; Xiaodong Shang; Qi Tan; Lujun Zhang; Hao Yu
Journal:  Front Microbiol       Date:  2022-08-16       Impact factor: 6.064

6.  Whole Genome Sequencing and Annotation of Naematelia aurantialba (Basidiomycota, Edible-Medicinal Fungi).

Authors:  Tao Sun; Yixuan Zhang; Hao Jiang; Kai Yang; Shiyu Wang; Rui Wang; Sha Li; Peng Lei; Hong Xu; Yibin Qiu; Dafeng Sun
Journal:  J Fungi (Basel)       Date:  2021-12-22
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.