Literature DB >> 31001648

Phylogenetic analysis and haplotype diversity in Christian residents of Lahore, Pakistan, using 17 Y-chromosomal STR loci.

Samia Saleem1, Ahmad Ali Shahid1, Muhammad Shafique2, Aqsa Rubab1, Faqeeha Javed1, Tayyab Husnain1.   

Abstract

This population data pertains to 250 unrelated male residents of the Christian population of Lahore, Pakistan. AmpF/STR®Yfiler PCR amplification kit was utilized for evaluation of 17 Y-chromosomal STRs loci. Ancestral lineages and parameters of forensic importance were examined leading to recognition of 135 unique out of 175 total haplotypes with diversity value of 0.991. All Y-STRs portrayed high discrimination power where DYS385 depicted the maximum value of 0.917. Multidimensional Scaling (MDS) and Analysis of Molecular Variance (AMOVA) were generated using YHRD (Y-Chromosome STR Haplotype Reference Database) tools. A pair-wise genetic distance comparison using Rst, Fst, and associated p values lead to the conclusion that studied Christian community was significantly demarcated from the rest of the global populations.

Entities:  

Keywords:  Christian population; Haplotype diversity; Polymorphism; Y-chromosomal STRs

Year:  2019        PMID: 31001648     DOI: 10.1007/s00414-019-02030-3

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  4 in total

1.  Publication of population data of linearly inherited DNA markers in the International Journal of Legal Medicine.

Authors:  Walther Parson; Lutz Roewer
Journal:  Int J Legal Med       Date:  2010-07-22       Impact factor: 2.686

2.  PowerMarker: an integrated analysis environment for genetic marker analysis.

Authors:  Kejun Liu; Spencer V Muse
Journal:  Bioinformatics       Date:  2005-02-10       Impact factor: 6.937

3.  DNA fingerprinting: improved DNA extraction from small blood samples.

Authors:  E Signer; C C Kuenzle; P E Thomann; U Hübscher
Journal:  Nucleic Acids Res       Date:  1988-08-11       Impact factor: 16.971

4.  DNA polymorphism detectable by restriction endonucleases.

Authors:  M Nei; F Tajima
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  4 in total
  1 in total

1.  Population genetic portrait of Pakistani Lahore-Christians based on 32 STR loci.

Authors:  Aqsa Rubab; Muhammad Shafique; Faqeeha Javed; Samia Saleem; Fatima Tuz Zahra; Dennis McNevin; Ahmad Ali Shahid
Journal:  Sci Rep       Date:  2020-11-03       Impact factor: 4.379

  1 in total

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