| Literature DB >> 31001258 |
Pardis-Sadat Tabatabaei-Panah1, Hamideh Moravvej2, Zahra Sadaf1, Hadis Babaei1, Maryam Geranmayeh1, Sedigheh Hajmanouchehri1, Ahmad Karimi1, Fatemeh Sajjadi1, Fereshteh Arghand1, Ralf J Ludwig3, Mareike Witte4, Reza Akbarzadeh2,3,5.
Abstract
Bullous pemphigoid (BP) is a rare autoimmune skin blistering disease, characterized by the presence of autoantibodies against hemidesmosomal autoantigens. Cytokine expression is altered in BP patients, and several of these differently expressed cytokines, including IL-1α, IL-1β, IL-8, and TNF-α, contribute to disease pathogenesis. Since genetic polymorphisms in the genes of these cytokines might be implicated in susceptibility to BP disease, we aimed at testing this implication in susceptibility to BP in an Iranian cohort. Blood samples were collected from the subjects and genomic DNA was extracted. To detect the single nucleotide polymorphisms (SNPs), IL-1α (rs1800587), IL-1β (rs1143627, rs16944, rs1143634), IL-8 (rs4073), and TNF-α (rs1799964, rs1800630, rs1799724, and rs361525) genes were genotyped in BP patients and healthy controls as well as IL-8 (rs4073) in pemphigus vulgaris (PV) patients. Quantitative gene expression was evaluated by RT-PCR analysis. A significant difference was observed in the distribution of genotypes or alleles of IL-8 SNP between the BP patients and controls. The A-allele of IL-8 SNP is significantly more prevalent in the control individuals compared to the BP patient. To further validate this observation, we included PV patients as an additional control. Again, the A-allele of IL-8 SNP is significantly more prevalent in the PV compared to the BP patients. While we observed a trend toward significant differences regarding alleles of TNF-α rs1799724 as well as alleles of TNF-α rs1799964, this difference was, however, not evident after correction for multiple analysis. There was no significant difference in all other studied SNPs. In contrast to IL-1α, IL-1β, and TNF-α, IL-8 gene expression levels were significantly higher in the patients than that of controls. The minor allele in IL-8 SNP might play a protective role in susceptibility to BP in Iranian patients. Although higher expression levels of IL-8 gene was found in the patients compared with healthy controls, these levels, however, suggest no association with the examined polymorphism. Moreover, further investigation revealed an elevation in gene expression between wild and polymorphic genotypes of IL-1α rs1800587 and TNF-α rs361525 in the patient group and these SNPs are therefore associated with altering the levels of gene expression.Entities:
Keywords: autoimmune disease; bullous pemphigoid; gene expression; gene polymorphism; proinflammatory cytokines
Year: 2019 PMID: 31001258 PMCID: PMC6455081 DOI: 10.3389/fimmu.2019.00636
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 7.561
Genotype and allele frequencies of IL-1α, IL-1β, IL-8, and TNF-α gene polymorphisms in Iranian patients with BP and respective controls.
| C/C | 0.40 | 0.20 | 0.41 (0.19–0.91) | 0.09 | ||
| C/T | 0.45 | 0.70 | ||||
| T/T | 0.15 | 0.10 | ||||
| C-allele | 0.625 | 0.550 | 0.73 (0.39–1.37) | 0.33 | – | |
| T-allele | 0.375 | 0.450 | ||||
| C/C | 0.35 | 0.30 | 0.71 (0.36–1.38) | 0.31 | – | |
| C/T | 0.55 | 0.50 | ||||
| T/T | 0.10 | 0.20 | ||||
| C-allele | 0.625 | 0.550 | 0.73 (0.39–1.37) | 0.33 | – | |
| T-allele | 0.375 | 0.450 | ||||
| T/T | 0.35 | 0.30 | 0.91 (0.51–1.63) | 0.76 | – | |
| T/C | 0.40 | 0.45 | ||||
| C/C | 0.25 | 0.25 | ||||
| T-allele | 0.550 | 0.525 | 0.90 (0.48–1.68) | 0.75 | – | |
| C–allele | 0.450 | 0.475 | ||||
| G/G | 0.55 | 0.40 | 1.40 (0.62–3.15) | 0.41 | – | |
| G/A | 0.40 | 0.60 | ||||
| A/A | 0.05 | 0 | ||||
| G-allele | 0.750 | 0.700 | 0.77 (0.38–1.56) | 0.47 | – | |
| A-allele | 0.250 | 0.300 | ||||
| T/T | 0.70 | 0.25 | 0.40 (0.20–0.82) | |||
| T/A | 0.15 | 0.65 | ||||
| A/A | 0.15 | 0.10 | ||||
| T-allele | 0.775 | 0.575 | 0.39 (0.19–0.78) | |||
| A-allele | 0.225 | 0.425 | ||||
| T/T | 0.75 | 0.55 | 0.49 (0.24–1.00) | 0.05 | – | |
| T/C | 0.20 | 0.30 | ||||
| C/C | 0.05 | 0.15 | ||||
| T-allele | 0.850 | 0.700 | 0.41 (0.18–0.89) | 0.05 | ||
| C-allele | 0.150 | 0.300 | ||||
| C/C | 0.75 | 0.60 | 0.55 (0.27–1.12) | 0.10 | – | |
| C/A | 0.20 | 0.25 | ||||
| A/A | 0.05 | 0.15 | ||||
| C-allele | 0.850 | 0.725 | 0.46 (0.21–1.02) | 0.05 | – | |
| A-allele | 0.150 | 0.275 | ||||
| C/C | 0.70 | 0.90 | 3.85 (1.12–13.2) | 0.09 | ||
| C/T | 0.30 | 0.10 | ||||
| T/T | 0 | 0 | ||||
| C-allele | 0.850 | 0.950 | 3.35 (1.03–10.8) | 0.08 | ||
| T-allele | 0.150 | 0.050 | ||||
| G/G | 0.30 | 0.15 | 0.41 (0.13–1.23) | 0.11 | – | |
| G/A | 0.70 | 0.85 | ||||
| A/A | 0 | 0 | ||||
| G-allele | 0.650 | 0.575 | 0.72 (0.38–1.37) | 0.33 | – | |
| A-allele | 0.350 | 0.425 |
P-values (P) were performed based on the logistic regression test and a value of < 0.05 was considered statistically significant. BP, bullous pemphigoid; OR, odds ratio; CI, confidence interval; n, number; Pc, Corrected P-value. Statistically significant P-values are shown in bold.
Comparison of genotype and allele frequencies of IL-8 rs4073 gene polymorphism in PV Iranian patients with healthy control subjects as well as BP patients.
| T/T | 0.32 | 0.70 | 0.25 | 1.07 (0.61–1.87) | 2.35 (1.32–4.21) | 0.81 | ||
| T/A | 0.48 | 0.15 | 0.65 | |||||
| A/A | 0.20 | 0.15 | 0.10 | |||||
| T-allele | 0.56 | 0.775 | 0.575 | 1.06 (0.62–1.82) | 0.58 (0.34–0.99) | 0.81 | ||
| A-allele | 0.44 | 0.225 | 0.425 |
P values (P) were performed based on the logistic regression test and a value of < 0.05 was considered statistically significant. BP, pemphigus vulgaris; OR, odds ratio; CI, confidence interval; n, number; Pc, Corrected P-value.
PV vs. control;
PV vs. BP.
PV vs. Control;
PV vs. BP.
Genotype Pc: 0.012; Allele Pc: 0.12. Statistically significant P-values are shown in bold.
Figure 1Linkage disequilibrium pattern of the genomic region in chromosome 2 and 6 located between SNPs IL-1α and IL-1β (rs1800587, rs1143627, rs16944, and rs1143634) and TNF-α (rs1799964, rs1800630, rs1799724, rs1800629, and rs361525), respectively.
Haplotype patterns with their frequencies in the population.
| CTTG | 0.22 | 0.07 | 0.78 | TCCGG | 0.22 | 2.73 | 0.09 |
| CCCG | 0.14 | 0.01 | 0.89 | TCCGA | 0.14 | 0.09 | 0.76 |
| TCCA | 0.13 | 0.03 | 0.85 | CACGG | 0.13 | 0.09 | 0.75 |
| CCTG | 0.11 | 0.78 | 0.37 | CACGA | 0.11 | 1.59 | 0.20 |
| TCTG | 0.09 | 0.08 | 0.77 | TACGG | 0.09 | 2.98 | 0.08 |
| CTCG | 0.07 | 0.15 | 0.69 | TCTGA | 0.07 | 0.06 | 0.79 |
| Global haplotype association | 0.2 | Global haplotype association | 0.08 | ||||
Haplotypes with a frequency < 5% are not listed. P < 0.05 was considered statistically significant.
Association of clinical characteristics and demographic data in BP patient with polymorphic and wild genotypes in IL-1α, IL-1β, IL-8, and TNF-α gene polymorphisms.
| Characteristics | rs1800587 | rs16944 | rs1143627 | rs1143634 | rs4073 | rs1799964 | rs1800630 | rs1799724 | rs361525 |
| Age (years) | 0.26 | 0.50 | 0.17 | 0.63 | 0.95 | 0.35 | 0.43 | ||
| Disease duration (years) | 0.53 | 0.17 | 0.90 | 0.90 | 0.10 | 0.17 | 0.17 | 0.68 | 0.87 |
| Age of onset (years) | 0.19 | 0.31 | 0.31 | 0.55 | 0.76 | 0.44 | 0.30 | ||
| Gender, male/female | 0.57 | 0.12 | 0.24 | 0.99 | 0.07 | 0.07 | |||
| Autoimmune diseases | 0.57 | 0.88 | 0.42 | 0.34 | 0.99 | 0.42 | 0.42 | 0.76 | 0.76 |
| Familial history of BP | 0.23 | 0.99 | 0.40 | 0.73 | 0.99 | 0.99 | 0.40 | 0.34 | 0.34 |
| Heart diseases | 0.05 | 0.46 | 0.14 | 0.17 | 0.16 | 1.00 | |||
| Hypertension | 0.10 | 0.44 | 0.70 | 0.28 | 0.19 | 0.70 | 0.70 | 0.88 | 0.11 |
| Focal infection | 0.57 | 0.19 | 0.42 | 0.34 | 0.76 | 0.07 | 0.07 | ||
| Skin Diseases | 0.13 | 0.06 | 0.20 | 0.40 | 0.43 | 0.67 | 0.67 | 0.42 | |
| Anemia | 0.29 | 0.11 | 1.00 | 0.23 | 0.40 | 1.00 | 1.00 | 0.39 | |
| Stress | 0.43 | 0.13 | 0.71 | 0.18 | 0.67 | 0.71 | 0.71 | 0.33 | 0.07 |
| Depression | 0.13 | 0.06 | 0.67 | 0.40 | 0.43 | 0.21 | 0.20 | 0.42 | |
P-values (P) were performed based on the chi-square or t-test and a value of < 0.05 was considered statistically significant. Statistically significant P-values are shown in bold.
Figure 2Quantitative real-time RT-PCR analysis of IL-1α, IL-1β, and IL-8 RNA expression of the patients with BP or control individuals. Comparison of candidate gene expressions/GAPDH ratio is shown between patient and control subjects (A) as well as between wild and polymorphic genotypes in the patient group (B), expressed as median with interquartile range and were compared based on the Mann-Whitney U-test. n.s., non-significant.