Literature DB >> 30999076

Altered dynamics may drift pathological fibrillization in membraneless organelles.

B Tüű-Szabó1, G Hoffka2, N Duro2, M Fuxreiter3.   

Abstract

Protein phase transition can generate non-membrane bound cellular compartments, which can convert from liquid-like to solid-like states. While the molecular driving forces of phase separation have been largely understood, much less is known about the mechanisms of material-state conversion. We apply a recently developed algorithm to describe the weak interaction network of multivalent motifs, and simulate the effect of pathological mutations. We demonstrate that linker dynamics is critical to the material-state of biomolecular condensates. We show that linker flexibility/mobility is a major regulator of the weak, heterogeneous meshwork of multivalent motifs, which promotes phase transition and maintains a liquid-like state. Decreasing linker dynamics increases the propensity of amyloid-like fragments via hampering the motif-exchange and reorganization of the weak interaction network. In contrast, increasing linker mobility may compensate rigidifying mutations, suggesting that the meshwork of weak, variable interactions may provide a rescue mechanism from aggregation. Motif affinity, on the other hand, has a moderate impact on fibrillization. Here we demonstrate that the fuzzy framework provides an efficient approach to handle the intricate organization of membraneless organelles, and could also be applicable to screen for pathological effects of mutations.
Copyright © 2019 Elsevier B.V. All rights reserved.

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Year:  2019        PMID: 30999076     DOI: 10.1016/j.bbapap.2019.04.005

Source DB:  PubMed          Journal:  Biochim Biophys Acta Proteins Proteom        ISSN: 1570-9639            Impact factor:   3.036


  5 in total

Review 1.  Features of molecular recognition of intrinsically disordered proteins via coupled folding and binding.

Authors:  Jing Yang; Meng Gao; Junwen Xiong; Zhengding Su; Yongqi Huang
Journal:  Protein Sci       Date:  2019-09-04       Impact factor: 6.725

2.  Excitation Energy Migration Unveils Fuzzy Interfaces within the Amyloid Architecture.

Authors:  Anupa Majumdar; Debapriya Das; Priyanka Madhu; Anamika Avni; Samrat Mukhopadhyay
Journal:  Biophys J       Date:  2020-04-23       Impact factor: 4.033

Review 3.  Stress-Induced Membraneless Organelles in Eukaryotes and Prokaryotes: Bird's-Eye View.

Authors:  Anna S Fefilova; Alexander V Fonin; Innokentii E Vishnyakov; Irina M Kuznetsova; Konstantin K Turoverov
Journal:  Int J Mol Sci       Date:  2022-04-30       Impact factor: 6.208

4.  Multivalent polymers can control phase boundary, dynamics, and organization of liquid-liquid phase separation.

Authors:  Emiko Zumbro; Alfredo Alexander-Katz
Journal:  PLoS One       Date:  2021-11-08       Impact factor: 3.240

5.  Single-droplet surface-enhanced Raman scattering decodes the molecular determinants of liquid-liquid phase separation.

Authors:  Anamika Avni; Ashish Joshi; Anuja Walimbe; Swastik G Pattanashetty; Samrat Mukhopadhyay
Journal:  Nat Commun       Date:  2022-07-28       Impact factor: 17.694

  5 in total

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