Literature DB >> 30993787

Investigating the diagnostic performance of HOTTIP, PVT1, and UCA1 long noncoding RNAs as a predictive panel for the screening of colorectal cancer patients with lymph node metastasis.

Ehsan Gharib1, Fakhrosadat Anaraki2, Kaveh Baghdar1, Pegah Ghavidel3, Hossein Sadeghi1,4, Parinaz Nasri Nasrabadi3, Noshad Peyravian1, Hamid Asadzadeh Aghdaei1, Mohammad Reza Zali5, Ehsan Nazemalhosseini Mojarad5.   

Abstract

Like other noncoding RNAs (ncRNAs), dysregulation of long ncRNAs (lncRNAs) has been associated with various clinicopathological features of colorectal cancer (CRC) patients such as lymph node metastasis (LNM). Recently, three aberrant expressed oncogenic lncRNA (onco-lncRNAs), including HOXA transcript at the distal tip (HOTTIP), plasmacytoma variant translocation 1 (PVT1), and urothelial carcinoma associated 1 (UCA1) have been reported in LNM. Herein, we compared the diagnostic performance of these lncRNAs as individual biomarkers and as a discriminating panel between LNM CRC patients, nonmetastatic lymph nodes (NLN) and normal healthy subjects. The lncRNAs expression level was measured by quantitative real-time PCR and analyzed by the Mann-Whitney U test. The receiver operating characteristic (ROC) curve analysis was applied to evaluate the diagnostic power. The Kaplan-Meier survival analysis was performed to outline the overall survival (OS) of CRC patients with an abnormal level of lncRNAs. The area under the ROC curve (AUC) of the overexpressed HOTTIP (0.7817; 95% CI, 0.6809-0.8824), PVT1 (0.8559; 95% CI, 0.7737-0.9382), and UCA1 (0.8135; 95% CI, 0.722-0.9051) introduced them as individual CRC biomarkers. As a predictive panel, the AUC values of the HOTTIP, PVT1, and UCA1 for training set were 0.9256 (95% CI, 0.8634-0.9879; all CRCs), 0.8708 (95% CI, 0.7709-0.9378; NLN) and 0.9804 (95% CI, 0.9585-0.9998; LNM), and for validation set were 0.9286 (95% CI, 0.8752-0.9820; all CRCs), 0.8911 (95% CI, 0.8238-0.9585; NLN), and 0.9833 (95% CI, 0.9642-1.002; LNM), respectively. Also, HOTTIP/PVT1/UCA1 panel dysregulation had a marked correlation with patient's OS in training set (logrank test P = 0.0121; hazard ratio [HR], 0.1225; 95% confidence interval [CI], 0.02376-0.6312), and in validation set (logrank test P < 0.0001, HR, 0.2003; 95% CI, 0.08942-0.4486). These data showed that the combination of HOTTIP, PVT1, and UCA1 as a predictive panel, has a better diagnostic performance than each of these lncRNAs individually, and could be used for the screening of patients with advanced CRC.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  HOTTIP; PVT1; UCA1; biomarker; colorectal cancer; lymph node metastasis

Year:  2019        PMID: 30993787     DOI: 10.1002/jcb.28739

Source DB:  PubMed          Journal:  J Cell Biochem        ISSN: 0730-2312            Impact factor:   4.429


  7 in total

1.  Hypoxia induces the activation of hepatic stellate cells through the PVT1-miR-152-ATG14 signaling pathway.

Authors:  Fujun Yu; Buyuan Dong; Peihong Dong; Yanghuan He; Jianjian Zheng; Ping Xu
Journal:  Mol Cell Biochem       Date:  2019-12-21       Impact factor: 3.396

Review 2.  Biomarkers in Colorectal Cancer: Current Research and Future Prospects.

Authors:  Olorunseun O Ogunwobi; Fahad Mahmood; Akinfemi Akingboye
Journal:  Int J Mol Sci       Date:  2020-07-27       Impact factor: 5.923

Review 3.  Long Non-Coding RNA in the Pathogenesis of Cancers.

Authors:  Yujing Chi; Di Wang; Junpei Wang; Weidong Yu; Jichun Yang
Journal:  Cells       Date:  2019-09-01       Impact factor: 6.600

4.  ImReLnc: Identifying Immune-Related LncRNA Characteristics in Human Cancers Based on Heuristic Correlation Optimization.

Authors:  Meihong Gao; Shuhui Liu; Yang Qi; Xinpeng Guo; Xuequn Shang
Journal:  Front Genet       Date:  2022-01-10       Impact factor: 4.599

5.  Expression and Clinical Significance of Novel Long Noncoding RNA Fibroblast Growth Factor 10AS and FGF10 in Colorectal Cancer.

Authors:  Leili Rejali; Seyed Yoosef Seyedna; Hamid Asadzadeh Aghdaei; Ehsan Nazemalhosseini Mojarad; Mehrdad Hashemi
Journal:  Cell J       Date:  2021-11-23       Impact factor: 2.479

Review 6.  PVT1 Long Non-coding RNA in Gastrointestinal Cancer.

Authors:  Águeda Martínez-Barriocanal; Diego Arango; Higinio Dopeso
Journal:  Front Oncol       Date:  2020-01-31       Impact factor: 6.244

7.  Development and validation of a lipogenic genes panel for diagnosis and recurrence of colorectal cancer.

Authors:  Ehsan Gharib; Parinaz Nasrinasrabadi; Mohammad Reza Zali
Journal:  PLoS One       Date:  2020-03-10       Impact factor: 3.240

  7 in total

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