Literature DB >> 30993370

Fungal Community Composition and Potential Depth-Related Driving Factors Impacting Distribution Pattern and Trophic Modes from Epi- to Abyssopelagic Zones of the Western Pacific Ocean.

Wei Li1, Mengmeng Wang1,2, Gaëtan Burgaud3, Huaming Yu4,5, Lei Cai6.   

Abstract

Fungi play an important role in cycling organic matter and nutrients in marine ecosystems. However, the distribution of fungal communities in the ocean, especially the vertical distribution along depth in the water column, remained poorly understood. Here, we assess the depth-related distribution pattern of fungal communities along the water column from epi- to abyssopelagic zones of the Western Pacific Ocean using internal transcribed spacer 2 (ITS2) metabarcoding. Majority of the assigned OTUs were affiliated to Ascomycota, followed by three other minor phyla (Basidiomycota, Chytridiomycota, and Mucoromycota). The epipelagic zone harbored a higher OTU richness with distinct fungal communities as compared with meso-, bathy-, and abyssopelagic zones. Across the whole water column, depth appears as a key parameter for both fungal α- and β-diversity. However, when the dataset was split into the upper (5-500 m) and deeper (below 500 m) layers, no significant correlation was observed between depth and community compositions. In the upper layer, temperature and dissolved oxygen were recognized as the primary environmental factors shaping fungal α- and β- diversity. By parsing fungal OTUs into ecological categories, multi-trophic mode of nutrition was found to be more prevalent with increasing depth, suggesting a potential adaptation to the extreme conditions of the deep sea. This study provides new and meaningful information on the depth-stratified fungal diversity, community structure, and putative ecological roles in the open sea.

Entities:  

Keywords:  Depth; Metabarcoding; Mycobiome; Open sea; Trophic mode

Mesh:

Substances:

Year:  2019        PMID: 30993370     DOI: 10.1007/s00248-019-01374-y

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  55 in total

1.  Marine subsurface eukaryotes: the fungal majority.

Authors:  Virginia P Edgcomb; David Beaudoin; Rebecca Gast; Jennifer F Biddle; Andreas Teske
Journal:  Environ Microbiol       Date:  2011-01       Impact factor: 5.491

2.  Chytrids dominate arctic marine fungal communities.

Authors:  B T Hassett; R Gradinger
Journal:  Environ Microbiol       Date:  2016-02-04       Impact factor: 5.491

3.  Microbial eukaryote life in the new hypersaline deep-sea basin Thetis.

Authors:  Alexandra Stock; Hans-Werner Breiner; Maria Pachiadaki; Virginia Edgcomb; Sabine Filker; Violetta La Cono; Michail M Yakimov; Thorsten Stoeck
Journal:  Extremophiles       Date:  2011-10-19       Impact factor: 2.395

4.  A latitudinal diversity gradient in planktonic marine bacteria.

Authors:  Jed A Fuhrman; Joshua A Steele; Ian Hewson; Michael S Schwalbach; Mark V Brown; Jessica L Green; James H Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-28       Impact factor: 11.205

5.  In-depth analyses of deep subsurface sediments using 454-pyrosequencing reveals a reservoir of buried fungal communities at record-breaking depths.

Authors:  Vanessa Rédou; Maria Cristina Ciobanu; Maria G Pachiadaki; Virginia Edgcomb; Karine Alain; Georges Barbier; Gaëtan Burgaud
Journal:  FEMS Microbiol Ecol       Date:  2014-11-17       Impact factor: 4.194

Review 6.  Marine microbes see a sea of gradients.

Authors:  Roman Stocker
Journal:  Science       Date:  2012-11-02       Impact factor: 47.728

7.  Assessment of fungal diversity in deep-sea sediments by multiple primer approach.

Authors:  Purnima Singh; Chandralata Raghukumar; Pankaj Verma; Yogesh Shouche
Journal:  World J Microbiol Biotechnol       Date:  2011-08-09       Impact factor: 3.312

8.  Fungal community reveals less dispersal limitation and potentially more connected network than that of bacteria in bamboo forest soils.

Authors:  Xian Xiao; Yuting Liang; Sai Zhou; Shunyao Zhuang; Bo Sun
Journal:  Mol Ecol       Date:  2017-12-02       Impact factor: 6.185

9.  Fungal communities from methane hydrate-bearing deep-sea marine sediments in South China Sea.

Authors:  Xintian Lai; Lixiang Cao; Hongming Tan; Shu Fang; Yali Huang; Shining Zhou
Journal:  ISME J       Date:  2007-10-18       Impact factor: 10.302

10.  A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts.

Authors:  R Henrik Nilsson; Leho Tedersoo; Martin Ryberg; Erik Kristiansson; Martin Hartmann; Martin Unterseher; Teresita M Porter; Johan Bengtsson-Palme; Donald M Walker; Filipe de Sousa; Hannes Andres Gamper; Ellen Larsson; Karl-Henrik Larsson; Urmas Kõljalg; Robert C Edgar; Kessy Abarenkov
Journal:  Microbes Environ       Date:  2015-03-19       Impact factor: 2.912

View more
  2 in total

Review 1.  Diversity, Abundance, and Ecological Roles of Planktonic Fungi in Marine Environments.

Authors:  Kalyani Sen; Biswarup Sen; Guangyi Wang
Journal:  J Fungi (Basel)       Date:  2022-05-08

2.  Bacteria, Protists, and Fungi May Hold Clues of Seamount Impact on Diversity and Connectivity of Deep-Sea Pelagic Communities.

Authors:  Rongjie Zhao; Feng Zhao; Shan Zheng; Xuegang Li; Jianing Wang; Kuidong Xu
Journal:  Front Microbiol       Date:  2022-04-08       Impact factor: 6.064

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.