Literature DB >> 30990832

High-resolution directed human connectomes and the Consensus Connectome Dynamics.

Balázs Szalkai1, Csaba Kerepesi1,2, Bálint Varga1, Vince Grolmusz1,3.   

Abstract

Here we show a method of directing the edges of the connectomes, prepared from HARDI datasets from the human brain. Before the present work, no high-definition directed braingraphs were published, because the tractography methods in use are not capable of assigning directions to the neural tracts discovered. Previous work on the functional connectomes applied low-resolution functional MRI-detected statistical causality for the assignment of directions of connectomes of typically several dozens of vertices. Our method is based on the phenomenon of the "Consensus Connectome Dynamics", described earlier by our research group. In this contribution, we apply the method to the 423 braingraphs, each with 1015 vertices, computed from the public release of the Human Connectome Project, and we also made the directed connectomes publicly available at the site http://braingraph.org. We also show the robustness of our edge directing method in four independently chosen connectome datasets: we have found that 86% of the edges, which were present in all four datasets, get the same directions in all datasets; therefore the direction method is robust. While our new edge-directing method still needs more empirical validation, we think that our present contribution opens up new possibilities in the analysis of the high-definition human connectome.

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Mesh:

Year:  2019        PMID: 30990832      PMCID: PMC6467387          DOI: 10.1371/journal.pone.0215473

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  37 in total

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Review 2.  [Magnetic resonance imaging postprocessing techniques in the study of brain connectivity].

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Journal:  Radiologia       Date:  2011-04-07

3.  BDNF stabilizes synapses and maintains the structural complexity of optic axons in vivo.

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4.  The dorsal striatum and the dynamics of the consensus connectomes in the frontal lobe of the human brain.

Authors:  Csaba Kerepesi; Bálint Varga; Balázs Szalkai; Vince Grolmusz
Journal:  Neurosci Lett       Date:  2018-02-26       Impact factor: 3.046

Review 5.  Activity-driven sharpening of the retinotectal projection: the search for retrograde synaptic signaling pathways.

Authors:  John T Schmidt
Journal:  J Neurobiol       Date:  2004-04

6.  Graph Theoretical Analysis Reveals: Women's Brains Are Better Connected than Men's.

Authors:  Balázs Szalkai; Bálint Varga; Vince Grolmusz
Journal:  PLoS One       Date:  2015-07-01       Impact factor: 3.240

7.  Successful reconstruction of a physiological circuit with known connectivity from spiking activity alone.

Authors:  Felipe Gerhard; Tilman Kispersky; Gabrielle J Gutierrez; Eve Marder; Mark Kramer; Uri Eden
Journal:  PLoS Comput Biol       Date:  2013-07-11       Impact factor: 4.475

Review 8.  Cell biology in neuroscience: Cellular and molecular mechanisms underlying axon formation, growth, and branching.

Authors:  Tommy L Lewis; Julien Courchet; Franck Polleux
Journal:  J Cell Biol       Date:  2013-09-16       Impact factor: 10.539

9.  Resting-state fMRI in the Human Connectome Project.

Authors:  Stephen M Smith; Christian F Beckmann; Jesper Andersson; Edward J Auerbach; Janine Bijsterbosch; Gwenaëlle Douaud; Eugene Duff; David A Feinberg; Ludovica Griffanti; Michael P Harms; Michael Kelly; Timothy Laumann; Karla L Miller; Steen Moeller; Steve Petersen; Jonathan Power; Gholamreza Salimi-Khorshidi; Abraham Z Snyder; An T Vu; Mark W Woolrich; Junqian Xu; Essa Yacoub; Kamil Uğurbil; David C Van Essen; Matthew F Glasser
Journal:  Neuroimage       Date:  2013-05-20       Impact factor: 6.556

10.  The minimal preprocessing pipelines for the Human Connectome Project.

Authors:  Matthew F Glasser; Stamatios N Sotiropoulos; J Anthony Wilson; Timothy S Coalson; Bruce Fischl; Jesper L Andersson; Junqian Xu; Saad Jbabdi; Matthew Webster; Jonathan R Polimeni; David C Van Essen; Mark Jenkinson
Journal:  Neuroimage       Date:  2013-05-11       Impact factor: 6.556

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  9 in total

1.  The frequent subgraphs of the connectome of the human brain.

Authors:  Máté Fellner; Bálint Varga; Vince Grolmusz
Journal:  Cogn Neurodyn       Date:  2019-05-06       Impact factor: 5.082

2.  Good neighbors, bad neighbors: the frequent network neighborhood mapping of the hippocampus enlightens several structural factors of the human intelligence on a 414-subject cohort.

Authors:  Máté Fellner; Bálint Varga; Vince Grolmusz
Journal:  Sci Rep       Date:  2020-07-20       Impact factor: 4.379

3.  The Frequent Network Neighborhood Mapping of the human hippocampus shows much more frequent neighbor sets in males than in females.

Authors:  Máté Fellner; Bálint Varga; Vince Grolmusz
Journal:  PLoS One       Date:  2020-01-28       Impact factor: 3.240

4.  The braingraph.org database with more than 1000 robust human connectomes in five resolutions.

Authors:  Bálint Varga; Vince Grolmusz
Journal:  Cogn Neurodyn       Date:  2021-03-12       Impact factor: 5.082

5.  Identifying super-feminine, super-masculine and sex-defining connections in the human braingraph.

Authors:  László Keresztes; Evelin Szögi; Bálint Varga; Vince Grolmusz
Journal:  Cogn Neurodyn       Date:  2021-07-15       Impact factor: 5.082

6.  Introducing and applying Newtonian blurring: an augmented dataset of 126,000 human connectomes at braingraph.org.

Authors:  László Keresztes; Evelin Szögi; Bálint Varga; Vince Grolmusz
Journal:  Sci Rep       Date:  2022-02-23       Impact factor: 4.379

7.  Nonlocal models in the analysis of brain neurodegenerative protein dynamics with application to Alzheimer's disease.

Authors:  Swadesh Pal; Roderick Melnik
Journal:  Sci Rep       Date:  2022-05-05       Impact factor: 4.996

8.  Optimal Interplay between Synaptic Strengths and Network Structure Enhances Activity Fluctuations and Information Propagation in Hierarchical Modular Networks.

Authors:  Rodrigo F O Pena; Vinicius Lima; Renan O Shimoura; João Paulo Novato; Antonio C Roque
Journal:  Brain Sci       Date:  2020-04-10

9.  The Graph of Our Mind.

Authors:  Balázs Szalkai; Bálint Varga; Vince Grolmusz
Journal:  Brain Sci       Date:  2021-03-08
  9 in total

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