Literature DB >> 30989953

[Study on proteins in Guangdilong by nano LC/orbitrap fusion lumos HR-MS].

Hong-Shuang Dong1, Jing-Xian Zhang2, Qing Hu2, Yan-Chun Wang3, Jian Sun2, Su Zhang2, Hong Yu2, Rui Feng2, Xiu-Hong Mao2, Shen Ji1.   

Abstract

In the present study,fresh Guangdilong( GD),originating from Pheretima aspergillum,was taken as the object. The total proteins from GD were firstly separated by SDS-PAGE according to their molecular weights and in-gel digestion was then performed.After that,the peptides were analyzed by nano LC/orbitrap fusion lumos high resolution mass spectrometry( nano LC/orbitrap fusion lumos HR-MS). Protein identification was implemented by comparison with Annelida. fasta database using Proteome Discoverer software.As a result,386 proteins were tentatively identified,including chain F,globin B chain,glyceraldehyde-3-phosphate dehydrogenase,fibrinolytic protein,and so on. Most of the proteins took part in cell structure and energy metabolism,and fibrinolytic protein and lombricine kinase might be related to fibrinolytic activity. Protein classification based on gene ontology was carried out using PANTHER and KEGG for metabolic pathway enrichment. The results indicated that these proteins were related to diverse signal transduction pathways,including metabolic pathways,central carbon metabolism,biosynthesis of amino acids,ribosome,glycolysis,citrate cycle( TCA cycle),and so on. This study would lay the foundation for the further research on the proteins in GD and also their functions.

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Keywords:  Guangdilong; SDS-PAGE; orbitrap fusion lumos; proteome

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Year:  2019        PMID: 30989953     DOI: 10.19540/j.cnki.cjcmm.20181009.012

Source DB:  PubMed          Journal:  Zhongguo Zhong Yao Za Zhi        ISSN: 1001-5302


  1 in total

1.  Marker peptide screening and species-specific authentication of Pheretima using proteomics.

Authors:  Yufan Gu; Jingxian Zhang; Jian Sun; Hong Yu; Rui Feng; Xiuhong Mao; Xiangyun Yang; Yue Zhou; Qing Hu; Shen Ji
Journal:  Anal Bioanal Chem       Date:  2021-03-09       Impact factor: 4.142

  1 in total

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