Literature DB >> 30988665

Correction to: Identification of novel mutations in congenital afibrinogenemia patients and molecular modeling of missense mutations in Pakistani population.

Arshi Naz1, Arijit Biswas2, Tehmina Nafees Khan1, Anne Goodeve3, Nisar Ahmed4, Nazish Saqlain4, Shariq Ahmed1, Ikram Din Ujjan5, Tahir S Shamsi1, Johannes Oldenburg2.   

Abstract

[This corrects the article DOI: 10.1186/s12959-017-0143-3.].

Entities:  

Year:  2019        PMID: 30988665      PMCID: PMC6448250          DOI: 10.1186/s12959-019-0193-9

Source DB:  PubMed          Journal:  Thromb J        ISSN: 1477-9560


Correction to: Thromb J (2017) 15:24 https://doi.org/10.1186/s12959-017-0143-3 Following the publication of this article [1], the authors noted the following typographical errors: Affiliation 3 should read “University of Sheffield, Sheffield, United Kingdom” and Affiliations 6, 7, 8 and 9 were unnecessary duplicates In the abstract the sentence “Ten patients had mutations in FGA followed by three mutations in FGB and three mutations in FGG, respectively” should be “Ten patients had mutations in FGA followed by four mutations in FGB and two mutations in FGG, respectively.” In the Results section the following three sentences: “In FGA gene, eight mutations were identified as novel and the remaining two were reported mutations. Eight novel mutations include five missense, one nonsense and two frameshift mutations including homozygous and a compound heterozygous frameshift mutation. The two nonsense mutations in FGA are reported in literature. There is one more mutation with reported status in proband (C3). This patient had compound heterozygous mutation with frameshift as novel mutation and nonsense as reported. We identified three mutations in FGB including one novel missense mutation (C9) and two homozygous nonsense mutations reported in siblings. The FGG gene mutations are the rarest of all three fibrinogen genes. We detected three novel mutations including two similar nonsense mutations in siblings and one frameshift mutation in unrelated proband in different exons of FGG gene (Table 1).”
Table 1

Genotypic expression of mutations in fibrinogen gene (FGA, FGB & FGG)

IP #GeneExonMutationAmino Acid changeZygosityMutation typeReported/Novel
C1 FGA 1c.24C > Ap.Cys8*HomozygousNonsenseRef #23
C22c.143_144 del AAp.Lys (AAA)48Arg fs9*Compound HeterozygousFrame shiftNovel mutation
C35c.846delGp.Thr 283Arg fs138*Compound HeterozygousFrame shiftNovel mutation
4c.385C > Tp.Arg129*HomozygousNonsenseRef #24
C44c.385 C > Tp.Arg129*HomozygousNonsenseRef #24
C55c.598C > Tp.Gln200*HomozygousNonsenseRef 27*
C65c.904C > Gp.Pro302AlaHomozygousMissenseNovel mutation
C75c.913A > Gp.Thr 305 AlaHomozygousMissenseNovel mutation
C85c.992A > Gp.Thr331AlaHomozygousMissenseNovel mutation
C9i5c.992A > Gp.Thr331AlaHomozygousMissenseNovel mutation
C105c.973A > Gp.Ser325GlyHomozygousMissenseNovel mutation
C11A FGB 2c.141 > Tp.Arg47*HomozygousNonsenseRef # 25
C11B2c.141C > Tp.Arg47*HomozygousNonsenseRef # 25
C9 ii8c.1294T > Ap.Trp 432ArgHomozygousMissenseNovel mutation
C12 2 c.118_124dupTTCTTCA TTCTTCA Homozygous Frame shift Novel mutation
C13A FGG 4c.361A > Tp.Lys121*HomozygousNonsenseNovel mutation
C13B4c.361A > TLys121*HomozygousNonsenseNovel mutation

Identified novel and reported mutations in three genes of fibrinogen. The letter A and B with patient code designate the sibling status, i & ii shows mutation identified in same patient but in different genes, € (repor`ted mutation) c (complimentary deoxyribonucleic acid), A (adenine), T (thymine), C (cytosine), G (guanine), Lys (lysine), Arg (arginine), Tyr (tyrosine), Pro (proline), Trp (tryptophan), Thr (threonine), Gln (glycine), Cys = cystine, fs = frame shift, * stop codon number, FGA (fibrinogen Aα-chain gene), FGB (fibrinogen Bβ-chain gene), FGG (fibrinogen GƔ-chain gene.

Should be: “In FGA gene, seven mutations were identified as novel and the remaining three were reported mutations. Seven novel mutations include five missense and two frameshift mutations including homozygous and a compound heterozygous frameshift mutation. The three nonsense mutations in FGA are reported in literature. There is one more mutation with reported status in proband (C3). This patient had compound heterozygous mutation with frameshift as novel mutation and nonsense as reported. We identified four mutations in FGB including one novel missense mutation (C9), two homozygous nonsense mutations reported in siblings and one frameshift mutation(C12). The FGG gene mutations are the rarest of all three fibrinogen genes. We detected two novel similar nonsense mutations in siblings (Table 1).” There are a number of errors in Tables 1 and 2. The corrected versions are provided in this Correction article with the corrections given in bold.
Table 2

Assessment of coagulation markers and bleeding scores with consanguinity/ethnicity

IP#Fibrinogen Level(g/l)Thrombin Time(Sec)Prothrombin Time(Sec)Activated partial thromboplastin Time (aPTT) (Sec)Bleeding ScoreConsanguinityInterfamilial RelationEthnic Origin
*C10.0123> 120> 18020positiveUnrelatedNA
C20.0224> 120> 18021positiveUnrelatedPunjabi
C3033> 120> 18022positiveUnrelatedPunjabi
C40.124> 120> 18017positiveUnrelatedUrdu Speaking
C50.0231> 120> 18020positiveUnrelatedSindhi
C60.0125> 120> 18020positiveUnrelatedUrdu speaking
C70.0229> 120> 18022positiveUnrelatedSindhi
C80.030> 120> 18020positiveUnrelatedSindhi
C90.032> 120> 18022positiveUnrelatedPunjabi
C100.0125> 120> 18016positiveUnrelatedPunjabi
C11A0.0228> 120> 18018positive**Punjabi
C11B0.0124> 120> 18016positivePunjabi
C120.030> 120> 18021positiveUnrelatedPunjabi
C13A0.0224> 120> 18020positive**Punjabi
C13B0.0125> 120> 18021positivePunjabi

Shows the individual test values of PT, aPTT and fibrinogen (Clauss Method), consanguinity and the relationship status. Bleeding score calculated, Tosetto et al [26]. ** Siblings, NA = not available, s (seconds). The fibrinogen levels in all patients were found to be equal to or lower than 0 .1g/l (Normal Range 2-4 g/dl), PT more than 120 s (Normal Range 9–11 s) aPTT more than 180 s (Normal Range 24–27 s) and prolonged thrombin time (normal range 10–13 s). Ethnicity explains the frequency of majorly affected, thickly populated and largest province of Pakistan (Punjab).

Frameshift mutation (p.Gln282Thr fsx83*) and (p. Lys (AAA) 48Arg fs9*) are the novel compound heterozygous mutations which have manifested deletions along with frameshift defects” should in fact read “Frameshift mutations (p.Thr283Arg fs138*) and (p. Lys (AAA) 48Arg fs9*) are the novel compound heterozygous mutations which have manifested deletions along with frameshift defects. Genotypic expression of mutations in fibrinogen gene (FGA, FGB & FGG) Identified novel and reported mutations in three genes of fibrinogen. The letter A and B with patient code designate the sibling status, i & ii shows mutation identified in same patient but in different genes, € (repor`ted mutation) c (complimentary deoxyribonucleic acid), A (adenine), T (thymine), C (cytosine), G (guanine), Lys (lysine), Arg (arginine), Tyr (tyrosine), Pro (proline), Trp (tryptophan), Thr (threonine), Gln (glycine), Cys = cystine, fs = frame shift, * stop codon number, FGA (fibrinogen Aα-chain gene), FGB (fibrinogen Bβ-chain gene), FGG (fibrinogen GƔ-chain gene. Assessment of coagulation markers and bleeding scores with consanguinity/ethnicity Shows the individual test values of PT, aPTT and fibrinogen (Clauss Method), consanguinity and the relationship status. Bleeding score calculated, Tosetto et al [26]. ** Siblings, NA = not available, s (seconds). The fibrinogen levels in all patients were found to be equal to or lower than 0 .1g/l (Normal Range 2-4 g/dl), PT more than 120 s (Normal Range 9–11 s) aPTT more than 180 s (Normal Range 24–27 s) and prolonged thrombin time (normal range 10–13 s). Ethnicity explains the frequency of majorly affected, thickly populated and largest province of Pakistan (Punjab).
  1 in total

1.  Identification of novel mutations in congenital afibrinogenemia patients and molecular modeling of missense mutations in Pakistani population.

Authors:  Arshi Naz; Arijit Biswas; Tehmina Nafees Khan; Anne Goodeve; Nisar Ahmed; Nazish Saqlain; Shariq Ahmed; Ikram Din Ujjan; Tahir S Shamsi; Johannes Oldenburg
Journal:  Thromb J       Date:  2017-09-12
  1 in total

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