| Literature DB >> 30988665 |
Arshi Naz1, Arijit Biswas2, Tehmina Nafees Khan1, Anne Goodeve3, Nisar Ahmed4, Nazish Saqlain4, Shariq Ahmed1, Ikram Din Ujjan5, Tahir S Shamsi1, Johannes Oldenburg2.
Abstract
[This corrects the article DOI: 10.1186/s12959-017-0143-3.].Entities:
Year: 2019 PMID: 30988665 PMCID: PMC6448250 DOI: 10.1186/s12959-019-0193-9
Source DB: PubMed Journal: Thromb J ISSN: 1477-9560
Genotypic expression of mutations in fibrinogen gene (FGA, FGB & FGG)
| IP # | Gene | Exon | Mutation | Amino Acid change | Zygosity | Mutation type | Reported/Novel |
|---|---|---|---|---|---|---|---|
| C1 |
| 1 | c.24C > A | p.Cys8* | Homozygous | Nonsense | Ref #23 € |
| C2 | 2 | c.143_144 del AA | p.Lys (AAA)48Arg fs9* | Compound Heterozygous | Frame shift | Novel mutation | |
| C3 | 5 | c.846delG | p. | Compound Heterozygous | Frame shift | Novel mutation | |
| 4 | c.385C > T | p.Arg129* | Homozygous | Nonsense | Ref #24 € | ||
| C4 | 4 | c.385 C > T | p.Arg129* | Homozygous | Nonsense | Ref #24 € | |
| C5 | 5 | c.598C > T | p. | Homozygous | Nonsense | Ref 27* | |
| C6 | 5 | c.904C > G | p.Pro302Ala | Homozygous | Missense | Novel mutation | |
| C7 | 5 | c.913A > G | p.Thr 305 Ala | Homozygous | Missense | Novel mutation | |
| C8 | 5 | c.992A > G | p.Thr331Ala | Homozygous | Missense | Novel mutation | |
| C9 | 5 | c.992A > G | p.Thr331Ala | Homozygous | Missense | Novel mutation | |
| C10 | 5 | p.Ser325Gly | Homozygous | Missense | Novel mutation | ||
| C11A |
| 2 | c.141 > T | p.Arg47* | Homozygous | Nonsense | Ref # 25 € |
| C11B | 2 | c.141C > T | p.Arg47* | Homozygous | Nonsense | Ref # 25 € | |
| C9 | 8 | c.1294T > A | p.Trp 432Arg | Homozygous | Missense | Novel mutation | |
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| C13A |
| 4 | c.361A > T | p.Lys121* | Homozygous | Nonsense | Novel mutation |
| C13B | 4 | c.361A > T | Lys121* | Homozygous | Nonsense | Novel mutation |
Identified novel and reported mutations in three genes of fibrinogen. The letter A and B with patient code designate the sibling status, i & ii shows mutation identified in same patient but in different genes, € (repor`ted mutation) c (complimentary deoxyribonucleic acid), A (adenine), T (thymine), C (cytosine), G (guanine), Lys (lysine), Arg (arginine), Tyr (tyrosine), Pro (proline), Trp (tryptophan), Thr (threonine), Gln (glycine), Cys = cystine, fs = frame shift, * stop codon number, FGA (fibrinogen Aα-chain gene), FGB (fibrinogen Bβ-chain gene), FGG (fibrinogen GƔ-chain gene.
Assessment of coagulation markers and bleeding scores with consanguinity/ethnicity
| IP# | Fibrinogen Level | Thrombin Time | Prothrombin Time | Activated partial thromboplastin Time (aPTT) (Sec) | Bleeding Score | Consanguinity | Interfamilial Relation | Ethnic Origin |
|---|---|---|---|---|---|---|---|---|
| *C1 | 0.01 | 23 | > 120 | > 180 | 20 | positive | Unrelated | NA |
| C2 | 0.02 | 24 | > 120 | > 180 | 21 | positive | Unrelated | Punjabi |
| C3 | 0 | 33 | > 120 | > 180 | 22 | positive | Unrelated | Punjabi |
| C4 | 0.1 | 24 | > 120 | > 180 | 17 | positive | Unrelated | Urdu Speaking |
| C5 | 0.02 | 31 | > 120 | > 180 | 20 | positive | Unrelated | Sindhi |
| C6 | 0.01 | 25 | > 120 | > 180 | 20 | positive | Unrelated | Urdu speaking |
| C7 | 0.02 | 29 | > 120 | > 180 | 22 | positive | Unrelated | Sindhi |
| C8 | 0.0 | 30 | > 120 | > 180 | 20 | positive | Unrelated | Sindhi |
| C9 | 0.0 | 32 | > 120 | > 180 | 22 | positive | Unrelated | Punjabi |
| C10 | 0.01 | 25 | > 120 | > 180 | 16 | positive | Unrelated | Punjabi |
| C11A | 0.02 | 28 | > 120 | > 180 | 18 | positive | ** | Punjabi |
| C11B | 0.01 | 24 | > 120 | > 180 | 16 | positive | Punjabi | |
| C12 | 0.0 | 30 | > 120 | > 180 | 21 | positive | Unrelated | Punjabi |
| C13A | 0.02 | 24 | > 120 | > 180 | 20 | positive | ** | Punjabi |
| C13B | 0.01 | 25 | > 120 | > 180 | 21 | positive | Punjabi |
Shows the individual test values of PT, aPTT and fibrinogen (Clauss Method), consanguinity and the relationship status. Bleeding score calculated, Tosetto et al [26]. ** Siblings, NA = not available, s (seconds). The fibrinogen levels in all patients were found to be equal to or lower than 0 .1g/l (Normal Range 2-4 g/dl), PT more than 120 s (Normal Range 9–11 s) aPTT more than 180 s (Normal Range 24–27 s) and prolonged thrombin time (normal range 10–13 s). Ethnicity explains the frequency of majorly affected, thickly populated and largest province of Pakistan (Punjab).