| Literature DB >> 30987408 |
Marianna Lucafò1,2, Gabriele Stocco3, Stefano Martelossi4, Diego Favretto5, Raffaella Franca6, Noelia Malusà7, Angela Lora8,9, Matteo Bramuzzo10, Samuele Naviglio11, Erika Cecchin12, Giuseppe Toffoli13, Alessandro Ventura14,15, Giuliana Decorti16,17.
Abstract
The contribution of candidate genetic variants involved in azathioprine biotransformation on azathioprine efficacy and pharmacokinetics in 111 young patients with inflammatory bowel disease was evaluated. Azathioprine doses, metabolites thioguanine-nucleotides (TGN) and methylmercaptopurine-nucleotides (MMPN) and clinical effects were assessed after at least 3 months of therapy. Clinical efficacy was defined as disease activity score below 10. Candidate genetic variants (TPMT rs1142345, rs1800460, rs1800462, GSTA1 rs3957357, GSTM1, and GSTT1 deletion) were determined by polymerase chain reaction (PCR) assays and pyrosequencing. Statistical analysis was performed using linear mixed effects models for the association between the candidate variants and the pharmacological variables (azathioprine doses and metabolites). Azathioprine metabolites were measured in 257 samples (median 2 per patient, inter-quartile range IQR 1-3). Clinical efficacy at the first evaluation available resulted better in ulcerative colitis than in Crohn's disease patients (88.0% versus 52.5% responders, p = 0.0003, linear mixed effect model, LME). TGN concentration and the ratio TGN/dose at the first evaluation were significantly higher in responder. TPMT rs1142345 variant (4.8% of patients) was associated with increased TGN (LME p = 0.0042), TGN/dose ratio (LME p < 0.0001), decreased azathioprine dose (LME p = 0.0087), and MMPN (LME p = 0.0011). GSTM1 deletion (58.1% of patients) was associated with a 18.5% decrease in TGN/dose ratio and 30% decrease in clinical efficacy. GSTA1 variant (12.8% of patients) showed a trend (p = 0.049, LME) for an association with decreased clinical efficacy; however, no significant effect on azathioprine pharmacokinetics could be detected. In conclusion, GSTs variants are associated with azathioprine efficacy and pharmacokinetics.Entities:
Keywords: azathioprine; glutathione-S transferase; inflammatory bowel disease; pharmacogenetics; pharmacokinetics
Mesh:
Substances:
Year: 2019 PMID: 30987408 PMCID: PMC6523194 DOI: 10.3390/genes10040277
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Assay used for genotyping of the considered variants.
| Gene | Polymorphism | ||
|---|---|---|---|
| rs Number | Primary Locus Alleles [ | Genotyping Method | |
|
| rs1800462 | C > G missense | PCR-ASO [ |
| rs1800460 | C > T missense | PCR-RFLP [ | |
| rs1142345 | T > C missense | PCR-RFLP [ | |
|
| No rs number | Deletion | MULTIPLEX-PCR-ASO [ |
|
| No rs number | Deletion | MULTIPLEX-PCR-ASO [ |
|
| rs3957357 | A > G (5′-UTR) | Pyrosequencing [ |
ASO: allele specific oligonucleotides; GST: glutathione-S-transferase, TPMT: thiopurine-S-methyl transferase; RFLP: restriction fragment length polymorphism. PCR: polymerase chain reaction.
Demographic and clinical characteristics of the patients enrolled in the study.
| All Patients (n = 111) | ||
|---|---|---|
| Age (Years) at Time of Sample Collection | 15.1, 12.3–16.8 | |
| Gender | Female (%) | 52 (46.8%) |
| Male (%) | 59 (53.2%) | |
| Type of IBD | Crohn’s disease (%) | 61 (55.0%) |
| Ulcerative colitis (%) | 50 (45.0%) | |
| Length (days) of treatment with azathioprine | 533, 245–917 | |
For continuous variables, median, 1st–3rd quartiles values are reported. To report age and length of treatment median and interquartile range are provided; for patients with more than one measurement of azathioprine metabolites, median age and length of treatment were used.
Summary of azathioprine’s dose and metabolites’ concentrations.
| TGN | MMPN | Dose (mg/kg) | TGN/Dose | |
|---|---|---|---|---|
| Mean | 361.6 | 1698.1 | 2.0 | 192.8 |
| Median | 345.0 | 1044.0 | 2.1 | 179.4 |
| Interquartile range | 240.1–465.1 | 431.2–2079.7 | 1.7–2.3 | 120.1–227.9 |
MMPN indicated methylated nucleotides, TGN indicates thioguanine nucleotides.
Figure 1Response to azathioprine (AZA) and thioguanine nucleotides (TGN) concentration, as pmol/8 × 10^8 erythrocytes (left panel) or ratio between TGN concentration/daily azathioprine dose as pmol/8 × 10^8 erythrocytes/mg/kg/day (right panel). p-values are from linear mixed effect model (LME).
Genotype distribution in the 111 patients enrolled in the study.
|
|
|
| ||||
|
|
|
|
|
|
| |
|
| rs1800462 | 105 (100%) | 0 | 0 | 6 | NA |
|
| rs1800460 | 101 (97.1%) | 3 (2.9%) | 0 | 7 | 0.88 |
|
| rs1142345 | 100 (95.2%) | 5 (4.8%) | 0 | 6 | 0.81 |
|
| rs3957357 | 38 (44.2%) | 37 (43.0%) | 11 (12.8%) | 25 | 0.77 |
|
|
|
| ||||
|
|
|
| ||||
|
| Deletion | 42 (41.9%) | 61 (58.1%) | 8 | ||
|
| Deletion | 78 (75.7%) | 25 (24.3%) | 8 | ||
GST indicates glutathione-S-transferase, TPMT indicates thiopurine-S-methyl transferase.
Figure 2TPMT rs1142345 and azathioprine (AZA) dose, thioguanine (TGN) and methylmercaptopurine (MMPN) metabolites and efficacy. Concentration of azathioprine metabolites is expressed as pmol/8 × 10^8 erythrocytes (U). p-values are from linear mixed effect model (LME).
Figure 3GSTM1 deletion and azathioprine (AZA) dose, thioguanine (TGN), and methylmercaptopurine (MMPN) metabolites and efficacy. Concentration of azathioprine metabolites is expressed as pmol/8 × 10^8 erythrocytes (U). p-values are from linear mixed effect model (LME).
Figure 4GSTA1 rs3957357 variant and azathioprine (AZA) dose, thioguanine (TGN) and methylmercaptopurine (MMPN) metabolites and efficacy. Concentration of azathioprine metabolites is expressed as pmol/8 × 10^8 erythrocytes (U). p-values are from linear mixed effect model (LME).
Multivariate analysis considering for each pharmacological dependent variable covariate significant in the univariate analysis.
| Azathioprine Related Pharmacological Phenotype (Dependent Variable) | Independent Variable in Multivariate Generalized Linear Model | Comparison | Effect | |
|---|---|---|---|---|
| Efficacy of azathioprine at the first metabolite measurement | IBD type | UC versus CD | 1.96 | 0.0019 |
| Deletion versus Normal | −1.49 | 0.019 | ||
| AA versus GG/GA | −1.30 | 0.095 | ||
| AG versus GG | 24.7 | 0.43 | ||
| TGN metabolites concentrations | IBD type | UC versus CD | 0.061 | 0.074 |
| AG versus GG | 0.23 | 0.0049 | ||
| MMPN metabolites concentration | Deletion versus Normal | −0.21 | 0.014 | |
| Heterozygous versus wild-type | −0.72 | 0.0004 | ||
| Azathioprine dose | Age | Each year | −0.035 | <0.0001 |
| Heterozygous versus wild-type | −0.58 | 0.0056 | ||
| Ratio TGN/dose | Heterozygous versus wild-type | 0.41 | 0.0001 | |
| Deletion versus Normal | −0.072 | 0.055 |
GST: glutathione-S-transferase, IBD: inflammatory bowel disease, UC: ulcerative colitis, CD: Crohn’s disease, MMPN: methylated nucleotides, TGN: thioguanine nucleotides, TPMT: thiopurine-S-methyl transferase. The effect size represents the increase (positive value) or decrease (negative value) in the value of the dependent variable for each independent variable listed. p-values are from linear mixed-effect models.