| Literature DB >> 30985987 |
Cristiano Mota1, Mariam Esmaeeli2, Catarina Coelho1, Teresa Santos-Silva1, Martin Wolff3, Alessandro Foti2, Silke Leimkühler2, Maria João Romão1.
Abstract
Human aldehyde oxidase (hAOX1) is a molybdenum enzyme with high toxicological importance, but its physiological role is still unknown. hAOX1 metabolizes different classes of xenobiotics and is one of the main drug-metabolizing enzymes in the liver, along with cytochrome P450. hAOX1 oxidizes and inactivates a large number of drug molecules and has been responsible for the failure of several phase I clinical trials. The interindividual variability of drug-metabolizing enzymes caused by single nucleotide polymorphisms (SNPs) is highly relevant in pharmaceutical treatments. In this study, we present the crystal structure of the inactive variant G1269R, revealing the first structure of a molybdenum cofactor (Moco)-free form of hAOX1. These data allowed to model, for the first time, the flexible Gate 1 that controls access to the active site. Furthermore, we inspected the thermostability of wild-type hAOX1 and hAOX1 with various SNPs (L438V, R1231H, G1269R or S1271L) by CD spectroscopy and ThermoFAD, revealing that amino acid exchanges close to the Moco site can impact protein stability up to 10 °C. These results correlated with biochemical and structural data and enhance our understanding of hAOX1 and the effect of SNPs in the gene encoding this enzyme in the human population. ENZYMES: Aldehyde oxidase (EC1.2.3.1); xanthine dehydrogenase (EC1.17.1.4); xanthine oxidase (EC1.1.3.2). DATABASES: Structural data are available in the Protein Data Bank under the accession number 6Q6Q.Entities:
Keywords: human aldehyde oxidase; molybdenum cofactor; single nucleotide polymorphism; xanthine oxidase
Mesh:
Substances:
Year: 2019 PMID: 30985987 PMCID: PMC6487702 DOI: 10.1002/2211-5463.12617
Source DB: PubMed Journal: FEBS Open Bio ISSN: 2211-5463 Impact factor: 2.693
Figure 1Selected representations of the hAOX1‐G1269R crystal structure (cyan) superimposed with the hAOX1 WT structure (grey): (A) attempt to model the Moco cofactor: 2mFo‐DFc electron density maps represented in blue with contour level (σ) of 1.0 and negative mFo‐DFc electron density maps represented in red with contour level (σ) of −3.0; (B) stereo view of the enzyme active site from both hAOX1‐G1269R (cyan) and hAOX1 WT (grey); and (C) representation of the 2Fo‐Fc electron density map for the region of the hAOX1‐G1269R Gate I (residues Phe655‐Glu660; electron density contoured at σ 1.0).
Figure 2Overall structure of hAOX1 with location of the four SNPs of this study: G1269R and S1271L close to the Moco active site (lower panel) and L438V and R1231H at the entrance of the FAD pocket (top panel).
Figure 3The denaturation curves of hAOX1 SNPs and WT using the loss of the CD signal at 222 nm while the temperature is increasing from 10 to 70 °C (only shown from 30 °C). One unfolding transition state around 60 °C is pronounced for R1231H and L438V similar to that observed for the WT. However, two jumps are visible for G1269R and S1271L variants that suggest less stability for the variants with amino acid changed around the Mo active site.
Figure 4Comparison between Thermofluor and ThermoFAD data for hAOX1 WT. Thermal stability curves are plotted against normalized fluorescence signal. Green line, Thermofluor experiment using PTSD from Applied Biosystems as fluorescent probe; red line, ThermoFAD experiment measured without addition of any dye. Measurements were performed using an excitation wavelength of 470 nm and the ROX fluorescence emission filter (~ 610 nm).
Figure 5ThermoFAD of hAOX1 SNPs and WT. Thermal stability curves are plotted against normalized fluorescence signal. hAOX1 WT (red), L438V (black), R1231H (green), G1269R (purple) and S1271L (brown). Measurements were performed using an excitation wavelength of 470 nm and the SYBR Green fluorescence emission filter (~ 520 nm).
Data collection and refinement statistics of hAOX1‐G1269R
| Statistics | hAOX1‐G1269R |
|---|---|
| Data collection | |
| X‐ray source | ID30B (ESRF) |
| Wavelength (Å) | 0.976 |
| Resolution limit (Å) | 49.40–3.10 (3.29–3.10) |
| Space group |
|
| Cell parameters | |
|
| 148.20 |
|
| 132.20 |
| Total no. of reflections | 230 122 (37 789) |
| No. of unique reflections | 27 261 (4329) |
| Completeness (%) | 99.9 (100.0) |
| Redundancy | 8.4 (8.7) |
|
| 10.3 (86.3) |
| CC1/2 | 0.999 (0.728) |
|
| 15.6 (2.4) |
| Refinement | |
| Resolution range (Å) | 46.86–3.10 |
|
| 19.16 |
|
| 23.57 |
| RMSD from ideal geometry | |
| Bonds (Å) | 0.007 |
| Angles (°) | 0.496 |
| Avg | |
| Protein | 79.8 |
| Cofactors | 65.0 |
| Ligands | 83.2 |
| Waters | 62.2 |
| Ramachandran plot (%) | |
| Favoured | 95.85 |
| Allowed | 4.07 |
| Outliers | 0.08 |
Calculated melting temperatures and catalytic activities for WT and each SNP. The results are means ± SD of independent results
| hAOX1 protein | Domain location of the variant | ThermoFAD | CD spectroscopy | Activity (%) | PDB ID | ||
|---|---|---|---|---|---|---|---|
|
| Δ |
| Δ | ||||
| WT | – | 66.80 (± 0.06) | – | 60.03 (± 0.02) | – | 100 |
|
| L438V | FAD vicinity | 66.82 (± 0.09) | 0.02 | 60.03 (± 0.02) | 0 | 126 | – |
| R1231H | FAD vicinity | 66.71 (± 0.02) | −0.09 | 60.06 (± 0.01) | 0.03 | 48 | – |
| S1271L | Moco vicinity | 63.55 (± 0.03) | −3.25 | 60.13 (± 0.04) | 0.10 | 76 |
|
| 50.04 (± 0.01) | −10.09 | ||||||
| G1269R | Moco vicinity | 60.44 (± 0.05) | −6.36 | 60.03 (± 0.01) | 0 | 0 |
|
| 50.05 (± 0.07) | −10.08 | ||||||
k cat values of hAOX WT in 15, 16 were attributed as 100% and used to determine the relative activity. The kinetic assays used phenanthridine as substrate and molecular oxygen as electron acceptor.