Literature DB >> 30979687

Single-Cell Transcriptomics of Human and Mouse Lung Cancers Reveals Conserved Myeloid Populations across Individuals and Species.

Rapolas Zilionis1, Camilla Engblom2, Christina Pfirschke3, Virginia Savova4, David Zemmour5, Hatice D Saatcioglu6, Indira Krishnan7, Giorgia Maroni8, Claire V Meyerovitz9, Clara M Kerwin9, Sun Choi9, William G Richards9, Assunta De Rienzo9, Daniel G Tenen10, Raphael Bueno9, Elena Levantini8, Mikael J Pittet11, Allon M Klein12.   

Abstract

Tumor-infiltrating myeloid cells (TIMs) comprise monocytes, macrophages, dendritic cells, and neutrophils, and have emerged as key regulators of cancer growth. These cells can diversify into a spectrum of states, which might promote or limit tumor outgrowth but remain poorly understood. Here, we used single-cell RNA sequencing (scRNA-seq) to map TIMs in non-small-cell lung cancer patients. We uncovered 25 TIM states, most of which were reproducibly found across patients. To facilitate translational research of these populations, we also profiled TIMs in mice. In comparing TIMs across species, we identified a near-complete congruence of population structures among dendritic cells and monocytes; conserved neutrophil subsets; and species differences among macrophages. By contrast, myeloid cell population structures in patients' blood showed limited overlap with those of TIMs. This study determines the lung TIM landscape and sets the stage for future investigations into the potential of TIMs as immunotherapy targets.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  dendritic cell heterogeneity; macrophage heterogeneity; mouse-human comparison; myeloid cells; neutrophil heterogeneity; single-cell analysis; tumor immunology; tumor microenvironment

Mesh:

Year:  2019        PMID: 30979687      PMCID: PMC6620049          DOI: 10.1016/j.immuni.2019.03.009

Source DB:  PubMed          Journal:  Immunity        ISSN: 1074-7613            Impact factor:   31.745


  43 in total

1.  The Immunological Genome Project: networks of gene expression in immune cells.

Authors:  Tracy S P Heng; Michio W Painter
Journal:  Nat Immunol       Date:  2008-10       Impact factor: 25.606

2.  Broad and Largely Concordant Molecular Changes Characterize Tolerogenic and Immunogenic Dendritic Cell Maturation in Thymus and Periphery.

Authors:  Laurence Ardouin; Hervé Luche; Rabie Chelbi; Sabrina Carpentier; Alaa Shawket; Frédéric Montanana Sanchis; Camille Santa Maria; Pierre Grenot; Yannick Alexandre; Claude Grégoire; Anissa Fries; Thien-Phong Vu Manh; Samira Tamoutounour; Karine Crozat; Elena Tomasello; Audrey Jorquera; Even Fossum; Bjarne Bogen; Hiroaki Azukizawa; Marc Bajenoff; Sandrine Henri; Marc Dalod; Bernard Malissen
Journal:  Immunity       Date:  2016-08-16       Impact factor: 31.745

3.  Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages.

Authors:  Emmanuel L Gautier; Tal Shay; Jennifer Miller; Melanie Greter; Claudia Jakubzick; Stoyan Ivanov; Julie Helft; Andrew Chow; Kutlu G Elpek; Simon Gordonov; Amin R Mazloom; Avi Ma'ayan; Wei-Jen Chua; Ted H Hansen; Shannon J Turley; Miriam Merad; Gwendalyn J Randolph
Journal:  Nat Immunol       Date:  2012-09-30       Impact factor: 25.606

4.  Immunogenic Chemotherapy Sensitizes Tumors to Checkpoint Blockade Therapy.

Authors:  Christina Pfirschke; Camilla Engblom; Steffen Rickelt; Virna Cortez-Retamozo; Christopher Garris; Ferdinando Pucci; Takahiro Yamazaki; Vichnou Poirier-Colame; Andita Newton; Younes Redouane; Yi-Jang Lin; Gregory Wojtkiewicz; Yoshiko Iwamoto; Mari Mino-Kenudson; Tiffany G Huynh; Richard O Hynes; Gordon J Freeman; Guido Kroemer; Laurence Zitvogel; Ralph Weissleder; Mikael J Pittet
Journal:  Immunity       Date:  2016-02-09       Impact factor: 31.745

Review 5.  Understanding the tumor immune microenvironment (TIME) for effective therapy.

Authors:  Mikhail Binnewies; Edward W Roberts; Kelly Kersten; Vincent Chan; Douglas F Fearon; Miriam Merad; Lisa M Coussens; Dmitry I Gabrilovich; Suzanne Ostrand-Rosenberg; Catherine C Hedrick; Robert H Vonderheide; Mikael J Pittet; Rakesh K Jain; Weiping Zou; T Kevin Howcroft; Elisa C Woodhouse; Robert A Weinberg; Matthew F Krummel
Journal:  Nat Med       Date:  2018-04-23       Impact factor: 53.440

6.  Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo.

Authors:  Daniel E Wagner; Caleb Weinreb; Zach M Collins; James A Briggs; Sean G Megason; Allon M Klein
Journal:  Science       Date:  2018-04-26       Impact factor: 47.728

7.  Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data.

Authors:  Samuel L Wolock; Romain Lopez; Allon M Klein
Journal:  Cell Syst       Date:  2019-04-03       Impact factor: 10.304

8.  Critical Role for CD103(+)/CD141(+) Dendritic Cells Bearing CCR7 for Tumor Antigen Trafficking and Priming of T Cell Immunity in Melanoma.

Authors:  Edward W Roberts; Miranda L Broz; Mikhail Binnewies; Mark B Headley; Amanda E Nelson; Denise M Wolf; Tsuneyasu Kaisho; Dusan Bogunovic; Nina Bhardwaj; Matthew F Krummel
Journal:  Cancer Cell       Date:  2016-07-14       Impact factor: 31.743

9.  Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.

Authors:  Diego Adhemar Jaitin; Ephraim Kenigsberg; Hadas Keren-Shaul; Naama Elefant; Franziska Paul; Irina Zaretsky; Alexander Mildner; Nadav Cohen; Steffen Jung; Amos Tanay; Ido Amit
Journal:  Science       Date:  2014-02-14       Impact factor: 47.728

10.  Unsupervised High-Dimensional Analysis Aligns Dendritic Cells across Tissues and Species.

Authors:  Martin Guilliams; Charles-Antoine Dutertre; Charlotte L Scott; Naomi McGovern; Dorine Sichien; Svetoslav Chakarov; Sofie Van Gassen; Jinmiao Chen; Michael Poidinger; Sofie De Prijck; Simon J Tavernier; Ivy Low; Sergio Erdal Irac; Citra Nurfarah Mattar; Hermi Rizal Sumatoh; Gillian Hui Ling Low; Tam John Kit Chung; Dedrick Kok Hong Chan; Ker Kan Tan; Tony Lim Kiat Hon; Even Fossum; Bjarne Bogen; Mahesh Choolani; Jerry Kok Yen Chan; Anis Larbi; Hervé Luche; Sandrine Henri; Yvan Saeys; Evan William Newell; Bart N Lambrecht; Bernard Malissen; Florent Ginhoux
Journal:  Immunity       Date:  2016-09-13       Impact factor: 31.745

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  312 in total

1.  A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage.

Authors:  Amnon Sharir; Pauline Marangoni; Rapolas Zilionis; Mian Wan; Tomas Wald; Jimmy K Hu; Kyogo Kawaguchi; David Castillo-Azofeifa; Leo Epstein; Kyle Harrington; Pierfrancesco Pagella; Thimios Mitsiadis; Christian W Siebel; Allon M Klein; Ophir D Klein
Journal:  Nat Cell Biol       Date:  2019-09-02       Impact factor: 28.824

2.  Cxcl10+ monocytes define a pathogenic subset in the central nervous system during autoimmune neuroinflammation.

Authors:  Amir Giladi; Lisa Katharina Wagner; Hanjie Li; Dorothea Dörr; Chiara Medaglia; Franziska Paul; Anat Shemer; Steffen Jung; Simon Yona; Matthias Mack; Achim Leutz; Ido Amit; Alexander Mildner
Journal:  Nat Immunol       Date:  2020-04-20       Impact factor: 25.606

Review 3.  Neutrophils as regulators of cardiovascular inflammation.

Authors:  Carlos Silvestre-Roig; Quinte Braster; Almudena Ortega-Gomez; Oliver Soehnlein
Journal:  Nat Rev Cardiol       Date:  2020-01-29       Impact factor: 32.419

4.  Extensive Remodeling of the Immune Microenvironment in B Cell Acute Lymphoblastic Leukemia.

Authors:  Matthew T Witkowski; Igor Dolgalev; Nikki A Evensen; Chao Ma; Tiffany Chambers; Kathryn G Roberts; Sheetal Sreeram; Yuling Dai; Anastasia N Tikhonova; Audrey Lasry; Chunxu Qu; Deqing Pei; Cheng Cheng; Gabriel A Robbins; Joanna Pierro; Shanmugapriya Selvaraj; Valeria Mezzano; Marla Daves; Philip J Lupo; Michael E Scheurer; Cynthia A Loomis; Charles G Mullighan; Weiqiang Chen; Karen R Rabin; Aristotelis Tsirigos; William L Carroll; Iannis Aifantis
Journal:  Cancer Cell       Date:  2020-05-28       Impact factor: 31.743

5.  MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate.

Authors:  Abbie S Ireland; Alexi M Micinski; David W Kastner; Bingqian Guo; Sarah J Wait; Kyle B Spainhower; Christopher C Conley; Opal S Chen; Matthew R Guthrie; Danny Soltero; Yi Qiao; Xiaomeng Huang; Szabolcs Tarapcsák; Siddhartha Devarakonda; Milind D Chalishazar; Jason Gertz; Justin C Moser; Gabor Marth; Sonam Puri; Benjamin L Witt; Benjamin T Spike; Trudy G Oliver
Journal:  Cancer Cell       Date:  2020-05-30       Impact factor: 31.743

6.  Thioredoxin activity confers resistance against oxidative stress in tumor-infiltrating NK cells.

Authors:  Ying Yang; Shi Yong Neo; Ziqing Chen; Weiyingqi Cui; Yi Chen; Min Guo; Yongfang Wang; Haiyan Xu; Annina Kurzay; Evren Alici; Lars Holmgren; Felix Haglund; Kai Wang; Andreas Lundqvist
Journal:  J Clin Invest       Date:  2020-10-01       Impact factor: 14.808

Review 7.  Targeting the epigenetic regulation of antitumour immunity.

Authors:  Simon J Hogg; Paul A Beavis; Mark A Dawson; Ricky W Johnstone
Journal:  Nat Rev Drug Discov       Date:  2020-09-14       Impact factor: 84.694

Review 8.  Neutrophil diversity and plasticity in tumour progression and therapy.

Authors:  Sebastien Jaillon; Andrea Ponzetta; Diletta Di Mitri; Angela Santoni; Raffaella Bonecchi; Alberto Mantovani
Journal:  Nat Rev Cancer       Date:  2020-07-21       Impact factor: 60.716

9.  Targeted Single-Cell RNA and DNA Sequencing With Fluorescence-Activated Droplet Merger.

Authors:  Iain C Clark; Cyrille L Delley; Chen Sun; Rohan Thakur; Shannon L Stott; Shravan Thaploo; Zhaorong Li; Francisco J Quintana; Adam R Abate
Journal:  Anal Chem       Date:  2020-10-13       Impact factor: 6.986

10.  Dendritic Cell Paucity Leads to Dysfunctional Immune Surveillance in Pancreatic Cancer.

Authors:  Samarth Hegde; Varintra E Krisnawan; Brett H Herzog; Chong Zuo; Marcus A Breden; Brett L Knolhoff; Graham D Hogg; Jack P Tang; John M Baer; Cedric Mpoy; Kyung Bae Lee; Katherine A Alexander; Buck E Rogers; Kenneth M Murphy; William G Hawkins; Ryan C Fields; Carl J DeSelm; Julie K Schwarz; David G DeNardo
Journal:  Cancer Cell       Date:  2020-03-16       Impact factor: 31.743

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