Literature DB >> 30976640

Compendium of hand, foot and mouth disease data in Malaysia from years 2010-2017.

Bryan Raveen Nelson1, Hisham Atan Edinur2, Mohd Tajuddin Abdullah1,3.   

Abstract

This data article is constructed using information from hand, foot and mouth disease outbreaks in every Malaysian state. Important information like total number of cases from every state and age group, humidity, air temperature and wind as well as types of viruses isolated from patients infected with hand, foot and mouth disease were gathered and sorted into four tables. The information sources include Malaysian Administrative Modernisation and Management Planning Unit (MAMPU), National Centre for Biotechnology Information (NCBI) and National Oceanic and Atmospheric Administration (NOAA). Since the Ministry of Health Malaysia only begun archiving hand, foot and mouth disease cases between years 2010-2017 in MAMPU, weather data extractions are following the similar timeline. Conversely, published data on viruses and their serotypes associated to hand, foot and mouth disease were extracted from NCBI but, data availability were limited between the years 2010 and 2014.

Entities:  

Year:  2019        PMID: 30976640      PMCID: PMC6441719          DOI: 10.1016/j.dib.2019.103868

Source DB:  PubMed          Journal:  Data Brief        ISSN: 2352-3409


Specifications table Outbreak raw data is tangible for disease etiology and its emergence in Southeast Asia. Virulence data are useful for descriptive epidemiology like secular trends, seasonality, epidemic period, geography and person attributes (disease-age and disease-scale) relationships. The data raises awareness, informs about susceptibility within the community and also informs about phenotypic changes. This data supports disease model framing in tropical environments. Data on monthly-annual and geographical trends supports development of public health policies.

Data

All data in this article were mined from web portals like MAMPU [1], NCBI [2] and NOAA [3]. While year-round weather data (temperature, humidity and wind) were not available for all states, strategic location of Melaka, Pulau Pinang and Sarawak made them ideal to cover the Malaysian Peninsular and Borneo. This data is prepared as monthly average [4] and presented from years 2010–2017 (Table 1). Historical records for hand, foot and mouth disease were retrieved from MAMPU, reorganized into monthly and annual pools before divided into annual age- (Table 2) and case-groups (Table 3). Data comprising of hand, foot and mouth disease associated viruses were extracted from NCBI before separated by collection dates, serotypes and nucleotide codes (Table 4).
Table 1

Weather data by monthly average between years 2010 and 2017 for the Malaysian states Pulau Pinang, Melaka and Sarawak.

Month-YearPulau Pinang
Melaka
Sarawak
Temp. (°C)Humid. (%)Wind. (km/h)Temp. (°C)Humid. (%)Wind. (km/h)Temp. (°C)Humid. (%)Wind. (km/h)
Jan-1028.374.27.527.373.38.926.074.96.3
Feb-1029.475.87.428.574.39.026.676.26.4
Mar-1029.176.47.528.375.27.426.575.86.3
Apr-1029.278.26.828.376.65.927.276.36.2
May-1029.578.76.328.677.45.427.677.06.1
Jun-1028.277.16.228.076.05.427.375.35.9
Jul-1027.876.06.827.475.25.226.475.16.4
Aug-1028.376.86.827.375.35.626.674.56.4
Sep-1027.876.36.627.375.35.126.574.46.1
Oct-1028.276.45.828.075.25.426.674.57.0
Nov-1027.276.36.427.274.95.826.374.76.6
Dec-1026.575.06.426.474.25.725.874.16.2
Jan-1127.173.17.025.873.07.325.673.96.5
Feb-1128.174.57.427.473.57.925.974.26.4
Mar-1127.175.96.527.374.76.426.374.36.4
Apr-1128.176.76.527.875.56.026.675.46.4
May-1128.377.45.828.176.55.126.975.76.2
Jun-1128.576.96.327.976.75.426.875.16.1
Jul-1128.376.67.027.776.06.027.074.86.1
Aug-1127.576.16.927.575.75.927.275.36.4
Sep-1127.576.26.427.475.85.526.875.16.6
Oct-1127.376.66.227.175.65.526.275.36.1
Nov-1127.276.16.626.975.85.626.575.26.9
Dec-1127.574.57.226.474.95.826.275.46.7
Jan-1227.974.27.027.074.46.226.174.86.9
Feb-1228.076.17.427.275.46.226.074.76.2
Mar-1227.776.26.327.475.85.426.475.16.2
Apr-1228.177.26.527.776.45.626.975.56.6
May-1228.277.25.928.076.65.327.776.06.3
Jun-1228.777.46.328.276.55.727.674.86.4
Jul-1227.976.07.127.375.95.426.875.06.2
Aug-1228.275.46.927.475.95.727.175.16.2
Sep-1227.575.06.527.776.15.527.574.96.2
Oct-1227.575.66.327.575.75.126.575.16.5
Nov-1227.675.36.126.976.04.826.574.96.2
Dec-1227.674.47.126.875.64.926.575.06.2
Jan-1328.174.86.927.274.75.826.774.97.0
Feb-1327.875.17.426.574.85.526.675.16.6
Mar-1329.377.97.028.576.65.727.575.56.9
Apr-1328.877.76.428.577.45.127.276.06.9
May-1329.377.76.628.377.24.927.276.46.7
Jun-1328.876.86.228.875.85.627.774.86.7
Jul-1328.376.45.927.675.45.227.073.67.1
Aug-1328.176.27.227.775.45.827.274.07.6
Sep-1327.876.26.427.375.35.526.774.77.1
Oct-1327.375.76.427.575.46.026.774.67.4
Nov-1327.876.26.427.375.85.426.274.66.9
Dec-1328.174.97.726.774.67.526.175.27.6
Jan-1427.970.88.426.471.99.925.472.97.5
Feb-1428.673.58.027.972.610.026.573.76.9
Mar-1429.475.78.028.173.78.626.774.96.6
Apr-1428.778.16.828.276.65.326.975.46.7
May-1428.678.26.528.477.25.427.676.76.4
Jun-1429.479.06.829.077.35.628.276.86.2
Jul-1429.077.76.228.276.85.228.575.16.8
Aug-1427.776.57.327.376.15.726.774.46.4
Sep-1427.976.47.027.575.55.427.273.97.3
Oct-1427.976.87.027.875.95.426.974.36.5
Nov-1427.976.77.127.175.95.426.674.87.0
Dec-1427.274.87.026.775.35.926.574.46.4
Jan-1527.972.37.626.772.88.525.673.57.2
Feb-1528.772.18.227.472.79.325.973.86.6
Mar-1528.875.27.428.175.26.926.974.36.7
Apr-1528.777.96.528.477.75.327.476.16.6
May-1528.477.46.328.377.35.227.376.06.6
Jun-1528.877.36.628.677.85.628.675.76.6
Jul-1527.776.06.528.176.75.727.275.26.5
Aug-1527.775.76.228.077.35.727.775.76.6
Sep-1526.773.76.428.176.74.627.475.75.9
Oct-1526.473.86.927.577.04.926.775.96.2
Nov-1526.773.56.627.676.95.826.876.16.6
Dec-1527.872.57.428.276.77.427.276.66.4
Jan-1628.173.37.328.577.07.727.276.86.4
Feb-1628.172.08.827.975.09.526.676.36.9
Mar-1629.174.97.529.375.48.527.277.06.3
Apr-1629.175.56.729.677.66.127.676.86.8
May-1628.075.66.628.977.75.227.576.16.3
Jun-1628.574.96.528.276.65.326.975.26.5
Jul-1628.576.23.528.076.13.227.674.93.4
Aug-1628.476.36.028.676.44.927.774.97.1
Sep-1628.075.76.528.375.95.626.974.47.7
Oct-1627.576.35.728.375.86.126.875.07.3
Nov-1627.576.76.427.376.45.126.775.36.6
Dec-1627.575.56.627.375.65.626.875.46.9
Jan-1727.374.76.727.075.15.626.775.36.2
Feb-1728.073.37.627.174.86.826.374.16.8
Mar-1728.075.96.627.475.65.626.974.86.4
Apr-1728.276.56.528.076.45.026.675.46.6
May-1728.877.96.928.276.74.927.376.36.5
Jun-1728.776.56.627.975.94.727.275.36.2
Jul-1728.576.86.728.175.85.227.374.76.6
Aug-1728.176.17.227.575.55.027.074.66.3
Sep-1727.676.16.527.575.34.827.075.36.3
Oct-1728.375.86.627.875.85.126.974.96.8
Nov-1727.576.16.427.175.85.226.975.66.4
Dec-1728.073.37.527.274.56.526.675.36.9

Note: Weather data are abbreviated as ‘temp.’ to represent air temperature, ‘humid.’ to represent relative humidity and ‘wind.’ to represent wind speed. Weather of Pulau Pinang and Melaka represents Peninsular Malaysia whereas Sarawak represents Borneo.

Table 2

Different age groups that contracted hand, foot and mouth disease in every Malaysian state between years 2010 and 2017.

Age groupJohorKedahKelantanMelakaNegeri SembilanPahangPerakPerlisPulau pinangSabahSarawakSelangorTerengganuKuala LumpurLabuan
Child
2010974880164237327234657891458189503718081489660
2011486274105262189112229315468828621160723542
20122257106913427687413511231216154315691321262442702448323
201318167373873526602178222071193154883154998164104393
2014221596665578010062331620277143654593178679393230038
201520174432284375391701056867381334855344401691274315
201639741705991217213448162695577298525336524143278033915246
201722569605791100895484160722714861862710570342782276268
Adolescense
2010231310106087080
20110002000050115120
2012629601120683642270
2013411200110493935151
201481310090413957290
2015111000150234443194
2016163518031081022571191
20171112530200111134461121
Adult
201091425206129746381250
201114107413812157442290
2012542748182333230641612806537
2013206126504038521682848475
2014248101150260101312338320880
2015234463149018471512723707
2016348102831681226708368271363
20173856112514915554903662715
Senior adult
2010000000000010000
2011000000001101000
2012110000000025010
2013001000000010000
2014110000000022010
2015000000000014001
2016101100000008010
2017100200001001000

Note: The age groups are classified as child = 0–14 years, adolescence = 15–19 years, adult = 20–59 years and, senior adult = 60 to >75 years.

Table 3

Scale of hand, foot and mouth disease outbreaks in every state between years 2010 and 2017.

MonthJohorKedahKelantanMelakaNegeri SembilanPahangPerakPerlisPulau PinangSabahSarawakSelangorTerengganuKuala LumpurLabuan
2010
Jan262871196116461450723240
Feb4923121484352500704414240
Mar6137811784461001105015111610
Apr5137918102259464854314724370
May957419428745121517847381306241060
Jun10711824265936100425220348306191290
Jul112192163566511341121622349214221300
Aug14622134353336893015822425237292430
Sep5254101714824515910162934700
Oct12264122215620121373627414471210
Nov121309101731517821174732330
Dec43197459124558232690210
2011
Jan129238392351624250
Feb144545913138034274300
Mar17941413714134123375232
Apr41356186111251128837100
May2611025913152510109110240
Jun4015221137393241125501310
Jul1141632218252373126783280
Aug511325215619330227772370
Sep2821513132121203259431200
Oct59738332820305471140415525990
Nov44602322311446119574832566860
Dec545053531926240137647632358620
2012
Jan4227311323530108392561029551
Feb5553118634619331689113818321391400
Mar29813846612918452146311262652698101394179180
Apr487160361104160109294171932601263125940486135
May53915317421095442653625030910601343335338
Jun3791721361077368160412351591837950155830
Jul172117646654267921179941317460161450
Aug97105174435167517986510802966720
Sep8676723277683127112130125912940
Oct7837772134619671147642165783
Nov50249141322836074613184732
Dec3537912124524726740416821411
2013
Jan5128211818436624326831847913
Feb7737244130124553276127330910707
Mar2786357607136144137219821057263012610
Apr178663841631210714763041136584181284
May238534337613688211193407955631410314
Jun2249752428129111392133196065621911427
Jul13891321674248325185166289320115725
Aug88743313621066211155621734913702
Sep14564283164156315117352714939842
Oct17840252254124615782732844316792
Nov15871291865236020894052150015992
Dec876019212242416851629928411741
2014
Jan4751284723188017751636829826891
Feb68872883373211429323667746944800
Mar29510180898820266621011161331753831647
Apr2789550651131420219157481208781321931
May271104469112525226282535415351000113530
Jun1327323434320752813235858400151431
Jul8841283357126413734666919715601
Aug9145512659186544948665393261063
Sep13064554611316103105431628659341740
Oct27876846497191041810937455964422597
Nov31713312112216115180232095559918205043610
Dec2531067483952417626206374881387373417
2015
Jan278866854136351881517311913481197372845
Feb32772485710740267179218922647833117225
Mar2544229808326158107322923296321916474
Apr3412922525211141810422813485811518363
May27758143246411112741968494701713862
Jun10518824278581041100312192156512
Jul682241019522215551001383377
Aug1292663716843640447420716315
Sep8221103314228129393813244423
Oct9123730131442362583614267124
Nov51248232110192429035133156314
Dec38279118843013371615210693
2016
Jan9321122532114893097702248886
Feb1012618395314104922216523301310210
Mar2052323626732911055319704471612732
Apr308493516111282175241153202408233430766
May43676352901331343477430130239317507248627
Jun440160582242701132716234814070717646744514
Jul5081931202741649327896370130123515447742214
Aug75737715240320774365824131041313222917153520
Sep3782391512059324286573076589213521203299
Oct3882551752011259632659349169623168910143921
Nov1911561311775269215553152925611383743518
Dec2201419714175803014239445947315395844023
2017
Jan2551581019494672522626350882310614827640
Feb295137891421157130229210508136311434228533
Mar3258355167105752522413933818319513025936
Apr30710849145106512022114616713108602833064
May211633011844311129162875255661317525
Jun109581994691610113945038842091239
Jul147703210345227317103383934801912511
Aug22084356949378229101271914692015911
Sep142544361953596189036121400151396
Oct10048314367286371152783341131604
Nov94495334752575115679113319161693
Dec101545048592766247462884372815932
Table 4

Types of viruses associated with hand, foot and mouth disease in Malaysia.

JohorKedahKelantanMelakaPahangPulau pinangSarawakSelangorTerengganuKuala Lumpur
2010
KC894870.1 (Apr) [4]KC894871.1KC894874.1 (May) [4]KC894880.1 (Aug) [4]KC894876.1 (Jul) [4]KC894886.1 (Apr 2012) [4]KC894877.1KC894878.1KC894879.1 (Aug) [4]*KC894873.1 (May) [4]*KF734978.1KP890662.1KP890663.1 (Oct) [13]KJ675505.1KJ675507.1KJ675506.1 (Nov) [13]KC894872.1 (May) [4]KC894875.1 (Jun) [4]KC894881.1 (Sep) [4]JQ356548.1JQ356552.1JQ356554.1 (Oct) [13]JQ356547.1JQ356551.1JQ356560.1JQ356571.1 (Nov) [11, 13]JQ356564.1 (Dec) [13]
2011
****KP205031.1 (Mar) [9]KP205033.1 (May) [9]KP205032.1 (Aug) [9]KC894867.1 (Nov) [4]*KC894868.1KC894869.1 (Sep) [4]KP890664.1 (May) [13]KC894865.1 (Sep) [4]KC894866.1 (Oct) [4]JQ356556.1JQ356557.1 (Jan) [13]JQ356558.1 (Feb) [13]KP205031.1JQ356563.1 (Mar) [9, 13]Q356555.1 (Apr) [13]KP205033.1JQ356559.1 (May) [9,13]KP205032.1 (Aug) [13]JQ356568.1 (Nov) [9]
2012
KC894882.1KC894883.1KC894887.1KC894888.1KC894891.1KC894892.1 (Apr) [4]KC894889.1KC894890.1KC894893.1KC894894.1KC894896.1KC894897.1KC894898.1 (May) [4]KC894899.1KC894900.1 (June) [4]KC894902.1 (Aug) [4]KC894884.1 (Apr) [4]KC894895.1 (Aug) [4]**KC894885.1 (Apr) [4]KC894903.1 (Jun) [4]KP205034.1KP205035.1 (Oct) [3]**KC894901.1 (Jul) [4]KJ728862.1KJ728863.1KJ728864.1KJ728868.1 (Dec) [6,11]*KJ815033.1KT908016.1KT908015.1KT908038.1KT908004.1KT908005.1KT908006.1KT908026.1KT908027.1KT908028.1KT908029.1 (May) [1,2,4]KJ815034.1KT908017.1KT908007.1KT908031.1KT908032.1 (Jun) [1,4]KJ815035.1KT908018.1KT908008.1KT908009.1KT908010.1KT908011.1KT908033.1KT908034.1 (Jul) [1,4]KP205034.1KP205035.1KT908012.1KT908013.1KT908035.1KT908036.1 (Aug) [1,3,4]KP205034.1KP205035.1 (Nov) [6]KJ815037.1KT908019.1 (Dec) [1]
2013
****KR068478.1KR068480.1KP205038.1KP205039.1KP205036.1KP205037.1 (May) [4,8,9]KR068477.1KR068479.1 (Jul) [4]**KF772887.1KF772888.1KF772889.1KF772904.1KF772905.1KF772906.1KJ728867.1KJ728866.1KJ728865.1KJ728858.1KJ728859.1KJ728861.1 (Jan)[1,11,12,13]KF772907.1KF772890.1KF772894.1KF772899.1KF772901.1KF772896.1 (Mar) [1,2,4]KF772908.1KF772891.1KF772909.1KF772892.1KF772902.1KF772897.1KF772903.1KF772898.1KJ728860.1 (Apr) [1], [4], [13]KF772900.1KF772895.1 (Jun) [2]KF772900.1KF772887.1KF772910.1KF772893.1 (Aug) [1]*KJ815038.1KJ815039.1KT908020.1KT908014.1KT908037.1 (Apr) [1,4]KR068478.1KR068480.1KP205039.1KP205038.1KP205036.1KP205037.1 (May) [4,8,9]KR068477.1KR068479.1 (Jul) [5]KJ815040.1KJ815041.1KJ815042.1KJ815043.1KJ815044.1KT908021.1KT908022.1KT908023.1KT908024.1KT908025.1 (Sep) [1]
2014
****KP204987.1KP205006.1 (Nov) [7,10]*****

Note: Data in this table were extracted from published nucleotide sequences in National Centre for Biotechnology Information. Picornaviridae members are defined using 1 = Coxsackie A6, 2 = Coxsackie A16, 3 = Coxsackie B3, 4 = Enterovirus A71, 5 = Enterovirus B5, 6 = Enterovirus D68, 7 = Echovirus 1, 8 = Echovirus 6, 9 = Echovirus 7, 10 = Echovirus 11, 11 = Rhinovirus A, 12 = Rhinovirus B and, 13 = Rhinovirus C. Keys in round (brackets) = the period of virus isolation whereas box [brackets] = virus serotypes. Information on HFMD causing viruses are not available for the states Labuan, Perak, Perlis and Sabah.

Weather data by monthly average between years 2010 and 2017 for the Malaysian states Pulau Pinang, Melaka and Sarawak. Note: Weather data are abbreviated as ‘temp.’ to represent air temperature, ‘humid.’ to represent relative humidity and ‘wind.’ to represent wind speed. Weather of Pulau Pinang and Melaka represents Peninsular Malaysia whereas Sarawak represents Borneo. Different age groups that contracted hand, foot and mouth disease in every Malaysian state between years 2010 and 2017. Note: The age groups are classified as child = 0–14 years, adolescence = 15–19 years, adult = 20–59 years and, senior adult = 60 to >75 years. Scale of hand, foot and mouth disease outbreaks in every state between years 2010 and 2017. Types of viruses associated with hand, foot and mouth disease in Malaysia. Note: Data in this table were extracted from published nucleotide sequences in National Centre for Biotechnology Information. Picornaviridae members are defined using 1 = Coxsackie A6, 2 = Coxsackie A16, 3 = Coxsackie B3, 4 = Enterovirus A71, 5 = Enterovirus B5, 6 = Enterovirus D68, 7 = Echovirus 1, 8 = Echovirus 6, 9 = Echovirus 7, 10 = Echovirus 11, 11 = Rhinovirus A, 12 = Rhinovirus B and, 13 = Rhinovirus C. Keys in round (brackets) = the period of virus isolation whereas box [brackets] = virus serotypes. Information on HFMD causing viruses are not available for the states Labuan, Perak, Perlis and Sabah.

Experimental design, materials, and methods

Historical weather (temperature, humidity and wind) data were retrieved from National Weather Service (NOAA) historical records that range from years 2010–2017. The sorting and arrangement of historical weather data followed procedures of Nelson et al. [5], [6]. Data mining from web portals like MAMPU and NCBI adopted a two-way inclusion keyword system [7], [8], [9], [10]. In this case, abbreviated keys like ‘CVA’, ‘CVB’, ‘EO7’, ‘HFMD’, ‘EV71’, ‘EVA’, ‘EVB’, ‘EVC’, ‘RHA’, ‘RHB’ and ‘RHC’ and-or virus names like ‘Coxsackivirus’, ‘Echovirus’, ‘Enterovirus’, ‘Rhinovirus’ were added to the primary keyword ‘Malaysia’. After first data extraction, the abbreviated keys and-or virus names were added with ‘Sabah’, ‘Sarawak’, ‘Labuan’, ‘Perak’, ‘Pahang’, ‘Kelantan’, ‘Johor’, ‘Negeri Sembilan’, ‘Perlis’, ‘Pulau Pinang’, ‘Penang’, ‘Kuala Lumpur’, ‘Selangor’ and ‘Terengganu’ as word strings. Notably, all nucleotide ascensions were sorted by period of publication, from 01 January 2010 to 31 December 2018. Information related to molecular ecology were first divided by ascension numbers and location sources [11], [12]. The crude data were then filtered and sorted first [13], [14], [15] before adapted with hierarchy-identification code system [16], [17] to ease data comprehension and also extraction.

Specifications table

Subject areaMedicine and Dentistry
More specific subject areaInfectious disease
Type of dataTable
How data was acquiredData mining from web portals of Malaysian Administrative Modernisation and Management Planning Unit, National Centre for Biotechnology Information and National Oceanic and Atmospheric Administration
Data formatRaw
Experimental factorsCases (number of infected by hand, foot and mouth disease) were arranged into age category, Malaysian states, months and years. Weather properties (temperature, humidity and wind) were arranged into monthly and yearly data. Viruses associated with hand, foot and mouth disease were arranged by serial numbers, serotypes, Malaysian states, months and years.
Experimental featuresReported cases of hand, foot and mouth disease, viral serotypes, weather conditions during outbreaks, published nucleotide sequences, keywords used, authenticity of data source and human error during calculations.
Data source locationNational Oceanic and Atmospheric Administration-Weather stations a) Pulau Pinang (Bayan Lepas) – N 05°17′59″, E 100°15′37″b) Melaka (Jalan Kota Laksamana) – N 02°11′45″, E 102°14′25″c) Sarawak (Kuching International Airport) – N 01°29′04″, E 110°20′48″-Web portalshttp://tgftp.nws.noaa.govhttp://www.data.gov.myhttps://www.ncbi.nlm.nih.gov
Data accessibilityAll data are available in this article
Related research articlesN.K.A. Khalib, N.J. Shafie, H.H. Basri, B.R. Nelson, M.T. Abdullah, Non-volant small mammal data from fragmented forests in Terengganu State. Data Brief 21 (2018) 1514–1520.
Value of the data

Outbreak raw data is tangible for disease etiology and its emergence in Southeast Asia.

Virulence data are useful for descriptive epidemiology like secular trends, seasonality, epidemic period, geography and person attributes (disease-age and disease-scale) relationships.

The data raises awareness, informs about susceptibility within the community and also informs about phenotypic changes.

This data supports disease model framing in tropical environments.

Data on monthly-annual and geographical trends supports development of public health policies.

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