Literature DB >> 30973672

Design of Natural-Product-Inspired Multitarget Ligands by Machine Learning.

Francesca Grisoni1, Daniel Merk1, Lukas Friedrich1, Gisbert Schneider1.   

Abstract

A virtual screening protocol based on machine learning models was used to identify mimetics of the natural product (-)-galantamine. This fully automated approach identified eight compounds with bioactivities on at least one of the macromolecular targets of (-)-galantamine, with different polypharmacological profiles. Two of the computer-generated hits possess an expanded spectrum of bioactivity on targets relevant to the treatment of Alzheimer's disease and are suitable for hit-to-lead expansion. These results advocate multitarget drug design by advanced virtual screening protocols based on chemically informed machine learning models.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Alzheimer's disease; polypharmacology; scaffold hopping; target prediction; virtual screening

Year:  2019        PMID: 30973672     DOI: 10.1002/cmdc.201900097

Source DB:  PubMed          Journal:  ChemMedChem        ISSN: 1860-7179            Impact factor:   3.466


  9 in total

1.  Molecular Scaffold Hopping via Holistic Molecular Representation.

Authors:  Francesca Grisoni; Gisbert Schneider
Journal:  Methods Mol Biol       Date:  2021

2.  Dual-targeted hit identification using pharmacophore screening.

Authors:  Galyna P Volynets; Sergiy A Starosyla; Mariia Yu Rybak; Volodymyr G Bdzhola; Oksana P Kovalenko; Vasyl S Vdovin; Sergiy M Yarmoluk; Michail A Tukalo
Journal:  J Comput Aided Mol Des       Date:  2019-11-06       Impact factor: 3.686

Review 3.  Artificial intelligence and machine-learning approaches in structure and ligand-based discovery of drugs affecting central nervous system.

Authors:  Vertika Gautam; Anand Gaurav; Neeraj Masand; Vannajan Sanghiran Lee; Vaishali M Patil
Journal:  Mol Divers       Date:  2022-07-11       Impact factor: 3.364

Review 4.  Rethinking drug design in the artificial intelligence era.

Authors:  Petra Schneider; W Patrick Walters; Alleyn T Plowright; Norman Sieroka; Jennifer Listgarten; Robert A Goodnow; Jasmin Fisher; Johanna M Jansen; José S Duca; Thomas S Rush; Matthias Zentgraf; John Edward Hill; Elizabeth Krutoholow; Matthias Kohler; Jeff Blaney; Kimito Funatsu; Chris Luebkemann; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2019-12-04       Impact factor: 84.694

Review 5.  Current computational methods for predicting protein interactions of natural products.

Authors:  Aurélien F A Moumbock; Jianyu Li; Pankaj Mishra; Mingjie Gao; Stefan Günther
Journal:  Comput Struct Biotechnol J       Date:  2019-10-28       Impact factor: 7.271

6.  DeepGraphMolGen, a multi-objective, computational strategy for generating molecules with desirable properties: a graph convolution and reinforcement learning approach.

Authors:  Yash Khemchandani; Stephen O'Hagan; Soumitra Samanta; Neil Swainston; Timothy J Roberts; Danushka Bollegala; Douglas B Kell
Journal:  J Cheminform       Date:  2020-09-04       Impact factor: 5.514

Review 7.  Natural product drug discovery in the artificial intelligence era.

Authors:  F I Saldívar-González; V D Aldas-Bulos; J L Medina-Franco; F Plisson
Journal:  Chem Sci       Date:  2021-12-13       Impact factor: 9.825

8.  Identification of novel off targets of baricitinib and tofacitinib by machine learning with a focus on thrombosis and viral infection.

Authors:  Maria L Faquetti; Francesca Grisoni; Petra Schneider; Gisbert Schneider; Andrea M Burden
Journal:  Sci Rep       Date:  2022-05-12       Impact factor: 4.996

Review 9.  Alkaloids in Contemporary Drug Discovery to Meet Global Disease Needs.

Authors:  Sharna-Kay Daley; Geoffrey A Cordell
Journal:  Molecules       Date:  2021-06-22       Impact factor: 4.411

  9 in total

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