Literature DB >> 30971806

Deep learning: new computational modelling techniques for genomics.

Gökcen Eraslan1,2, Žiga Avsec3, Julien Gagneur4, Fabian J Theis5,6,7.   

Abstract

As a data-driven science, genomics largely utilizes machine learning to capture dependencies in data and derive novel biological hypotheses. However, the ability to extract new insights from the exponentially increasing volume of genomics data requires more expressive machine learning models. By effectively leveraging large data sets, deep learning has transformed fields such as computer vision and natural language processing. Now, it is becoming the method of choice for many genomics modelling tasks, including predicting the impact of genetic variation on gene regulatory mechanisms such as DNA accessibility and splicing.

Entities:  

Mesh:

Year:  2019        PMID: 30971806     DOI: 10.1038/s41576-019-0122-6

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  57 in total

1.  High-resolution profiling of histone methylations in the human genome.

Authors:  Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Dustin E Schones; Zhibin Wang; Gang Wei; Iouri Chepelev; Keji Zhao
Journal:  Cell       Date:  2007-05-18       Impact factor: 41.582

2.  [Neuro-humoral regulation of the adenohypophysis].

Authors:  N Chaves
Journal:  Arq Bras Endocrinol Metabol       Date:  1969-04

3.  Effects of glucagon and isoproterenol on severity of acute myocardial ischemic injury.

Authors:  J Lekven; J K Kjekshus; O D Mijös
Journal:  Scand J Clin Lab Invest       Date:  1973-10       Impact factor: 1.713

4.  Growth and development of an infant receiving all nutrients exclusively by vein.

Authors:  D W Wilmore; S J Dudrick
Journal:  JAMA       Date:  1968-03-04       Impact factor: 56.272

5.  [Parents outside...sad testimony].

Authors:  M Forest-Cyr
Journal:  Infirm Can       Date:  1971-01

6.  Deferred treatment for prostate cancer.

Authors:  R Handley; T W Carr; D Travis; P H Powell; R R Hall
Journal:  Br J Urol       Date:  1988-09

7.  Epidemiologic studies of air pollution effects in Genoa, Italy.

Authors:  F L Petrilli; G Agnese; S Kanitz
Journal:  Arch Environ Health       Date:  1966-06

8.  [Poisoning caused by spring bee honey].

Authors:  P M Glushkov
Journal:  Gig Sanit       Date:  1966-01

9.  [Temporary loss of work capacity in myocardial infarct patients who underwent rehabilitation].

Authors:  I Bashliev
Journal:  Vutr Boles       Date:  1987
View more
  181 in total

1.  EnvCNN: A Convolutional Neural Network Model for Evaluating Isotopic Envelopes in Top-Down Mass-Spectral Deconvolution.

Authors:  Abdul Rehman Basharat; Xia Ning; Xiaowen Liu
Journal:  Anal Chem       Date:  2020-05-13       Impact factor: 6.986

2.  A refined cell-of-origin classifier with targeted NGS and artificial intelligence shows robust predictive value in DLBCL.

Authors:  Zijun Y Xu-Monette; Hongwei Zhang; Feng Zhu; Alexandar Tzankov; Govind Bhagat; Carlo Visco; Karen Dybkaer; April Chiu; Wayne Tam; Youli Zu; Eric D Hsi; Hua You; Jooryung Huh; Maurilio Ponzoni; Andrés J M Ferreri; Michael B Møller; Benjamin M Parsons; J Han van Krieken; Miguel A Piris; Jane N Winter; Fredrick B Hagemeister; Babak Shahbaba; Ivan De Dios; Hong Zhang; Yong Li; Bing Xu; Maher Albitar; Ken H Young
Journal:  Blood Adv       Date:  2020-07-28

Review 3.  Gut microbiome, big data and machine learning to promote precision medicine for cancer.

Authors:  Giovanni Cammarota; Gianluca Ianiro; Anna Ahern; Carmine Carbone; Andriy Temko; Marcus J Claesson; Antonio Gasbarrini; Giampaolo Tortora
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2020-07-09       Impact factor: 46.802

Review 4.  Tools for the analysis of high-dimensional single-cell RNA sequencing data.

Authors:  Yan Wu; Kun Zhang
Journal:  Nat Rev Nephrol       Date:  2020-03-27       Impact factor: 28.314

Review 5.  Single-Cell Techniques and Deep Learning in Predicting Drug Response.

Authors:  Zhenyu Wu; Patrick J Lawrence; Anjun Ma; Jian Zhu; Dong Xu; Qin Ma
Journal:  Trends Pharmacol Sci       Date:  2020-11-02       Impact factor: 14.819

6.  Seeker: alignment-free identification of bacteriophage genomes by deep learning.

Authors:  Noam Auslander; Ayal B Gussow; Sean Benler; Yuri I Wolf; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

7.  Deep learning of immune cell differentiation.

Authors:  Alexandra Maslova; Ricardo N Ramirez; Ke Ma; Hugo Schmutz; Chendi Wang; Curtis Fox; Bernard Ng; Christophe Benoist; Sara Mostafavi
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-25       Impact factor: 11.205

8.  Deep learning for inferring transcription factor binding sites.

Authors:  Peter K Koo; Matt Ploenzke
Journal:  Curr Opin Syst Biol       Date:  2020-06-11

Review 9.  The application of artificial neural networks in metabolomics: a historical perspective.

Authors:  Kevin M Mendez; David I Broadhurst; Stacey N Reinke
Journal:  Metabolomics       Date:  2019-10-18       Impact factor: 4.290

Review 10.  Genetic underpinnings of cerebral edema in acute brain injury: an opportunity for pathway discovery.

Authors:  Elayna Kirsch; Natalia Szejko; Guido J Falcone
Journal:  Neurosci Lett       Date:  2020-05-26       Impact factor: 3.046

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.