Literature DB >> 30968730

Phylogenetic position of the presumably extinct slender-billed curlew, Numenius tenuirostris.

Fedor S Sharko1, Eugenia S Boulygina2, Sergey M Rastorguev2, Svetlana V Tsygankova2, Pavel S Tomkovich3, Artem V Nedoluzhko2,4.   

Abstract

The high-capacity DNA analysis of museum samples opens new opportunities, associated with the investigation of extinct species evolution. Here, the complete mitochondrial genome of the presumably extinct bird species, the slender-billed curlew Numenius tenuirostris (Charadriiformes: Scolopacidae) is presented. Our results showed that mitochondrial DNA (mtDNA) is 16,705 base pairs (bp) in length and contain 13 protein-coding genes, two rRNA genes, and 22 tRNA genes. The overall base composition of the genome is 30.8% - A, 29.8% - C, 25.4% - T, 14.0% - G, and without a significant GC bias of 43.7%. Phylogenetic analyses based on the cytochrome B (cytB) gene and the whole mtDNA sequences revealed that N. tenuirostris had a close genetic relationship to Eurasian curlew (N. arquata), Far Eastern curlew (N. madagascariensis), and long-billed curlew - N. americanus. Besides, it reveals that Numenius genus is genetically distant from other Scolopacidae taxons. Together, these results provide a clear genetic perspective into the speciation process among the curlew genus members and points to a clear taxonomic position of N. tenuirostris.

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Keywords:  Extinction; Scolopacidae; historical DNA; mitochondrial genome; museum specimen

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Year:  2019        PMID: 30968730     DOI: 10.1080/24701394.2019.1597862

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  1 in total

1.  Molecular phylogeny of one extinct and two critically endangered Central Asian sturgeon species (genus Pseudoscaphirhynchus) based on their mitochondrial genomes.

Authors:  Sergey M Rastorguev; Nikolai S Mugue; Artem V Nedoluzhko; Fedor S Sharko; Svetlana V Tsygankova; Eugenia S Boulygina; Anna E Barmintseva; Anna A Krasivskaya; Amina S Ibragimova; Natalia M Gruzdeva
Journal:  Sci Rep       Date:  2020-01-20       Impact factor: 4.379

  1 in total

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