Literature DB >> 30968363

Bionano Genome Mapping: High-Throughput, Ultra-Long Molecule Genome Analysis System for Precision Genome Assembly and Haploid-Resolved Structural Variation Discovery.

Sven Bocklandt1, Alex Hastie2, Han Cao2.   

Abstract

Next Generation Sequencing (NGS) has rapidly advanced genomic research with tremendously increased throughput and reduced cost, through reading the fragmented genome content in massively parallel fashion. We have been able to sequence and map genomes to reference sequences with relative ease compared to the past. However, this mapping can only be accurately accomplished in the single copy regions of the genome, leaving out most duplicated genes and structural variation. Additionally, assembly of long genomic segments remains elusive since multi copy regions of the genome produce ambiguity when short read sequence is used.

Mesh:

Year:  2019        PMID: 30968363     DOI: 10.1007/978-981-13-6037-4_7

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  9 in total

Review 1.  The frontiers of sequencing in undiagnosed neurodevelopmental diseases.

Authors:  Hane Lee; Stanley F Nelson
Journal:  Curr Opin Genet Dev       Date:  2020-06-27       Impact factor: 5.578

Review 2.  Towards improved genetic diagnosis of human differences of sex development.

Authors:  Emmanuèle C Délot; Eric Vilain
Journal:  Nat Rev Genet       Date:  2021-06-03       Impact factor: 53.242

Review 3.  mRatBN7.2: familiar and unfamiliar features of a new rat genome reference assembly.

Authors:  Tristan V de Jong; Hao Chen; Wesley A Brashear; Kelli J Kochan; Andrew E Hillhouse; Yaming Zhu; Isha S Dhande; Elizabeth A Hudson; Mary H Sumlut; Melissa L Smith; Theodore S Kalbfleisch; Peter A Doris
Journal:  Physiol Genomics       Date:  2022-05-11       Impact factor: 4.297

4.  Semi-automated assembly of high-quality diploid human reference genomes.

Authors:  Erich D Jarvis; Giulio Formenti; Arang Rhie; Andrea Guarracino; Chentao Yang; Jonathan Wood; Alan Tracey; Francoise Thibaud-Nissen; Mitchell R Vollger; David Porubsky; Haoyu Cheng; Mobin Asri; Glennis A Logsdon; Paolo Carnevali; Mark J P Chaisson; Chen-Shan Chin; Sarah Cody; Joanna Collins; Peter Ebert; Merly Escalona; Olivier Fedrigo; Robert S Fulton; Lucinda L Fulton; Shilpa Garg; Jennifer L Gerton; Jay Ghurye; Anastasiya Granat; Richard E Green; William Harvey; Patrick Hasenfeld; Alex Hastie; Marina Haukness; Erich B Jaeger; Miten Jain; Melanie Kirsche; Mikhail Kolmogorov; Jan O Korbel; Sergey Koren; Jonas Korlach; Joyce Lee; Daofeng Li; Tina Lindsay; Julian Lucas; Feng Luo; Tobias Marschall; Matthew W Mitchell; Jennifer McDaniel; Fan Nie; Hugh E Olsen; Nathan D Olson; Trevor Pesout; Tamara Potapova; Daniela Puiu; Allison Regier; Jue Ruan; Steven L Salzberg; Ashley D Sanders; Michael C Schatz; Anthony Schmitt; Valerie A Schneider; Siddarth Selvaraj; Kishwar Shafin; Alaina Shumate; Nathan O Stitziel; Catherine Stober; James Torrance; Justin Wagner; Jianxin Wang; Aaron Wenger; Chuanle Xiao; Aleksey V Zimin; Guojie Zhang; Ting Wang; Heng Li; Erik Garrison; David Haussler; Ira Hall; Justin M Zook; Evan E Eichler; Adam M Phillippy; Benedict Paten; Kerstin Howe; Karen H Miga
Journal:  Nature       Date:  2022-10-19       Impact factor: 69.504

5.  nanotatoR: a tool for enhanced annotation of genomic structural variants.

Authors:  Surajit Bhattacharya; Hayk Barseghyan; Emmanuèle C Délot; Eric Vilain
Journal:  BMC Genomics       Date:  2021-01-06       Impact factor: 3.969

6.  Single-molecule optical genome mapping in nanochannels: multidisciplinarity at the nanoscale.

Authors:  Jonathan Jeffet; Sapir Margalit; Yael Michaeli; Yuval Ebenstein
Journal:  Essays Biochem       Date:  2021-04-16       Impact factor: 8.000

7.  Next-generation cytogenetics: Comprehensive assessment of 52 hematological malignancy genomes by optical genome mapping.

Authors:  Kornelia Neveling; Tuomo Mantere; Susan Vermeulen; Michiel Oorsprong; Ronald van Beek; Ellen Kater-Baats; Marc Pauper; Guillaume van der Zande; Dominique Smeets; Daniel Olde Weghuis; Marian J P L Stevens-Kroef; Alexander Hoischen
Journal:  Am J Hum Genet       Date:  2021-07-07       Impact factor: 11.025

8.  Detection of a mosaic CDKL5 deletion and inversion by optical genome mapping ends an exhaustive diagnostic odyssey.

Authors:  Heidi Cope; Hayk Barseghyan; Surajit Bhattacharya; Yulong Fu; Nicole Hoppman; Cherisse Marcou; Nicole Walley; Catherine Rehder; Kristen Deak; Anna Alkelai; Eric Vilain; Vandana Shashi
Journal:  Mol Genet Genomic Med       Date:  2021-05-06       Impact factor: 2.183

9.  Identifying Circular RNAs in HepG2 Expressing Genotype IV Swine Hepatitis E Virus ORF3 Via Whole Genome Sequencing.

Authors:  Hanwei Jiao; Yu Zhao; Zhixiong Zhou; Wenjie Li; Bowen Li; Guojing Gu; Yichen Luo; Xuehong Shuai; Cailiang Fan; Li Wu; Jixuan Chen; Qingzhou Huang; Fengyang Wang; Juan Liu
Journal:  Cell Transplant       Date:  2021 Jan-Dec       Impact factor: 4.064

  9 in total

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