Literature DB >> 30968361

Quantitation of mRNA Transcripts and Proteins Using the BD Rhapsody™ Single-Cell Analysis System.

Eleen Y Shum1, Elisabeth M Walczak2, Christina Chang2, H Christina Fan2.   

Abstract

In this review, we describe the BD Rhapsody™ Single-Cell Analysis System, a platform that allows high-throughput capture of nucleic acids from single cells using a simple cartridge workflow and a multitier barcoding system. The resulting captured information can be used to generate various types of next-generation sequencing (NGS) libraries, including whole transcriptome analysis for discovery biology and targeted RNA analysis for high sensitivity transcript detection. The BD Rhapsody system can be used with emerging applications, such as BD™ AbSeq assays, to profile gene expression in both mRNA and protein level to provide ultra-high resolution analysis of single cells.

Keywords:  Antibody; Barcoded beads; Magnetic beads; Microwell array; Molecular barcoding; Next-generation sequencing; Single cells; Targeted RNA-seq; Transcriptome; UMI; Unique molecular identifiers

Mesh:

Substances:

Year:  2019        PMID: 30968361     DOI: 10.1007/978-981-13-6037-4_5

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  17 in total

Review 1.  Sample-multiplexing approaches for single-cell sequencing.

Authors:  Yulong Zhang; Siwen Xu; Zebin Wen; Jinyu Gao; Shuang Li; Sherman M Weissman; Xinghua Pan
Journal:  Cell Mol Life Sci       Date:  2022-08-05       Impact factor: 9.207

2.  Checkpoint Inhibitors Modulate Plasticity of Innate Lymphoid Cells in Peripheral Blood of Patients With Hepatocellular Carcinoma.

Authors:  Bernd Heinrich; Benjamin Ruf; Varun Subramanyam; Yuta Myojin; Chunwei W Lai; Amanda J Craig; Jianyang Fu; Changqing Xie; Alexander Kroemer; Tim F Greten; Firouzeh Korangy
Journal:  Front Immunol       Date:  2022-06-27       Impact factor: 8.786

Review 3.  Towards a definition of microglia heterogeneity.

Authors:  Luke M Healy; Sameera Zia; Jason R Plemel
Journal:  Commun Biol       Date:  2022-10-20

4.  HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes.

Authors:  Jamie L Marshall; Benjamin R Doughty; Vidya Subramanian; Philine Guckelberger; Qingbo Wang; Linlin M Chen; Samuel G Rodriques; Kaite Zhang; Charles P Fulco; Joseph Nasser; Elizabeth J Grinkevich; Teia Noel; Sarah Mangiameli; Drew T Bergman; Anna Greka; Eric S Lander; Fei Chen; Jesse M Engreitz
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-21       Impact factor: 12.779

5.  Association of Premature Immune Aging and Cytomegalovirus After Solid Organ Transplant.

Authors:  Lauren E Higdon; Claire E Gustafson; Xuhuai Ji; Malaya K Sahoo; Benjamin A Pinsky; Kenneth B Margulies; Holden T Maecker; Jorg Goronzy; Jonathan S Maltzman
Journal:  Front Immunol       Date:  2021-05-27       Impact factor: 7.561

6.  The tumour microenvironment shapes innate lymphoid cells in patients with hepatocellular carcinoma.

Authors:  Bernd Heinrich; E Michael Gertz; Alejandro A Schäffer; Amanda Craig; Benjamin Ruf; Varun Subramanyam; John C McVey; Laurence P Diggs; Sophia Heinrich; Umberto Rosato; Chi Ma; Chunhua Yan; Ying Hu; Yongmei Zhao; Tsai-Wei Shen; Veena Kapoor; William Telford; David E Kleiner; Merril K Stovroff; Harmeet S Dhani; Jiman Kang; Thomas Fishbein; Xin Wei Wang; E Ruppin; Alexander Kroemer; Tim F Greten; Firouzeh Korangy
Journal:  Gut       Date:  2021-08-02       Impact factor: 31.793

Review 7.  Identification of non-cancer cells from cancer transcriptomic data.

Authors:  Michele Bortolomeazzi; Mohamed Reda Keddar; Francesca D Ciccarelli; Lorena Benedetti
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-10-22       Impact factor: 4.490

Review 8.  Single-Cell RNA Sequencing and Its Combination with Protein and DNA Analyses.

Authors:  Jane Ru Choi; Kar Wey Yong; Jean Yu Choi; Alistair C Cowie
Journal:  Cells       Date:  2020-05-04       Impact factor: 6.600

9.  Targeted Perturb-seq enables genome-scale genetic screens in single cells.

Authors:  Daniel Schraivogel; Andreas R Gschwind; Jennifer H Milbank; Daniel R Leonce; Petra Jakob; Lukas Mathur; Jan O Korbel; Christoph A Merten; Lars Velten; Lars M Steinmetz
Journal:  Nat Methods       Date:  2020-06-01       Impact factor: 28.547

Review 10.  Probing infectious disease by single-cell RNA sequencing: Progresses and perspectives.

Authors:  Geyang Luo; Qian Gao; Shuye Zhang; Bo Yan
Journal:  Comput Struct Biotechnol J       Date:  2020-10-21       Impact factor: 7.271

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