| Literature DB >> 30967944 |
Yingying Xiu1,2, Wei Liu1, Tianyi Wang1, Yi Liu1, Minwen Ha1.
Abstract
Epithelial cell transforming sequence 2 (ECT2) is a guanine nucleotide exchange factor encoded by the ECT2 gene, which is located on the 3q26.31 chromosomal region and is directly associated with the occurrence of cancers. The aim of the present study was to examine the expression and prognostic importance of ECT2 in various breast cancer subtypes using the online tools, Gene Expression Profiling Interactive Analysis, Kaplan-Meier-plotter and bc-GenExMiner. ECT2 mRNA expression was significantly different in oestrogen receptor ER(+) breast cancer; overexpression of ECT2 was associated with poor prognosis in ER+ breast cancer. The mRNA expression levels of ECT2 were increased in basal-like breast cancer and triple negative breast cancer, but were not significant for prognostic prediction. We identified ECT2-correlated genes and their corresponding Gene Ontology (GO) enrichment terms. The results revealed that GO: 0005524 (protein binding) had the greatest number of correlated genes and also contained ECT2. This suggested that overexpression of ECT2 may be a significant prognostic factor for poor outcome in ER+ breast cancer; however, the precise role of ECT2 in breast cancer requires further investigation.Entities:
Keywords: biomarker; breast cancer; epithelial cell transforming sequence 2; prognosis
Year: 2019 PMID: 30967944 PMCID: PMC6449927 DOI: 10.3892/mco.2019.1832
Source DB: PubMed Journal: Mol Clin Oncol ISSN: 2049-9450
Figure 1.ECT2 expression in various breast cancer tissue types and normal breast tissues. (A) ECT2 expression in breast cancer and normal tissues, and (B) PAM50 subtypes of breast cancer. *P<0.01, ***P<0.0001. ECT2, epithelial cell transforming sequence 2.
Figure 2.Kaplan-Meier survival curves of breast cancer patients exhibiting high or low ECT2 expression. (A) Overall survival and (B) progression-free survival. ECT2, epithelial cell transforming sequence 2; HR, hazard ratio.
Univariate Cox analysis of ECT2 for the survival of the patients with breast cancer.
| No. | Nodal status | ER status | Event status | P-value | Hazard ratio | 95% CI | No. patients | No. events |
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| 13 | N+ | ER- | AE | 0.2871 | 0.92 | 0.79–1.07 | 426 | 208 |
| 14 | N+ | ER- | MR | 0.3561 | 0.92 | 0.76–1.10 | 283 | 115 |
| 15 | N- | ER- | AE | 0.7096 | 1.03 | 0.89–1.18 | 622 | 211 |
| 16 | N- | ER- | MR | 0.8359 | 11.02 | 0.86–1.21 | 466 | 137 |
| 17 | Nm | ER- | AE | 0.9181 | 1.00 | 0.92–1.10 | 1,439 | 563 |
| 18 | Nm | ER- | MR | 0.9462 | 1.00 | 0.89–1.11 | 1,014 | 323 |
Bold font indicates significant findings. ECT2, epithelial cell transforming sequence 2; CI, confidence interval; AE, any event; MR, metastatic relapse; ER, oestrogen receptor status; N, nodal status; +, positive; -, negative; m, mixed.
Figure 3.ECT2 expression and overall survival in patients with ER+ and ER− breast cancer. (A) Differences in ECT2 expression according to ER (−/+) breast cancer. The overall survival curves of (B) ER (+) breast cancer patients and (C) ER (−) breast cancer patients. ECT2, epithelial cell transforming sequence 2; ER, oestrogen receptor; HR, hazard ratio.
Univariate Cox analysis of ECT2 for the survival of the patients with basal-like and/or triple negative breast cancer.
| Population | P-value | Hazard ratio | 95% CI | No. patients | No. events |
|---|---|---|---|---|---|
| Basal-like | 0.2609 | 1.07 | 0.95–1.19 | 1,091 | 384 |
| TNBC | 0.3510 | 0.91 | 0.76–1.10 | 371 | 120 |
| Basal-like and TNBC | 0.6229 | 1.07 | 0.81–1.42 | 242 | 66 |
ECT2, epithelial cell transforming sequence 2; CI, confidence interval.
Figure 4.ECT2 expression and overall survival in patients with basal-like breast cancer and/or TNBC. (A) Differences in ECT2 expression according to basal-like and/or triple negative breast cancers. (B) overall survival curves of basal-like and/or triple negative breast cancers patients. AE, any event; ECT2, epithelial cell transforming sequence 2; HR, hazard ratio; CI, confidence interval.
The top 10 positive and/or negative genes correlated with ECT2.
| Positive correlations | Negative correlations | ||||
|---|---|---|---|---|---|
| Gene | P-value | No. patients | Gene symbol | P-value | No. patients |
| PRINS | <0.0001[ | 155 | LOC100507412 | <0.0001 | 155 |
| CDK1 | <0.0001[ | 5,277 | LINC01660 | <0.0001 | 155 |
| SMC4 | <0.0001[ | 5,277 | LOC286161 | <0.0001 | 214 |
| CENPW | <0.0001[ | 2,607 | IGHV5-78 | <0.0001 | 206 |
| CLPSL1 | <0.0001[ | 139 | TARP | 0.0003 | 51 |
| CEP55 | <0.0001[ | 5,277 | TRBV19 | 0.0011 | 50 |
| RPL39P5 | <0.0001[ | 139 | MIR600HG | <0.0001 | 400 |
| MELK | <0.0001[ | 5,277 | USP17L6P | <0.0001 | 135 |
| RFC4 | <0.0001[ | 5,277 | BMS1P21 | <0.0001 | 326 |
| RRM2 | <0.0001[ | 5,106 | AARSD1 | 0.0013 | 59 |
P<0.05. AARSD1, alanyl-tRNA synthetase domain containing 1; BMS1P21, BMS1, ribosome biogenesis factor pseudogene 21; CDK1, cyclin-dependent kinase 1; CEP55, centrosomal protein 55; CENPW, centromere protein W; CLPSL1, colipase like 1; ECT2, epithelial cell transforming sequence 2; IGHV5-78, immunoglobulin heavy variable 5–78; LINC01660, long intergenic non-protein coding RNA 1660; PRINS, psoriasis associated non-protein coding RNA induced by stress; MELK, maternal embryonic leucine zipper kinase; RFC4, replication factor C subunit 4; RPL39P5, ribosomal protein L39 pseudogene 5; RRM2, ribonucleotide reductase regulatory subunit 2; SMC4, structural maintenance of chromosomes 4; TARP, TCR γ alternate reading frame protein; TRBV19, T cell receptor β variable 19; USP17L6P, ubiquitin carboxyl-terminal hydrolase 17-like protein 6.
GO enrichment of genes correlated with ECT2.
| GO terms | Description | P-value | Associated genes |
|---|---|---|---|
| Biological process | |||
| GO: 0051301 | Cell division | <0.0001[ | CDK1, SMC4, CENPW, CCNB1, MAD2L1, NEK2, BUB1B, NCAPG, KIF18B, FBXO5, KIF11, FAM83D, CKS2, CCNA2, CDCA8, UBE2C, KIF14, ZWINT, CCNE2, PTTG1, TPX2, CENPF, OIP5, SMC2, NDC80, KNSTRN, AURKA, CDC20, ERCC6L, NCAPH, CDCA2, KIF2C, NUF2, GPSM2, CKS1B, CDCA3, SPAG5, BIRC5, MASTL, SGO2, CCNB2, CENPE, NCAPG2, BUB1, SKA3, CDCA5, KIFC1 |
| GO: 00007062 | Sister chromatid cohesion | <0.0001[ | MAD2L1, BUB1B, CDCA8, ZWINT, CENPA, CENPF, NDC80, CDC20, ERCC6L, KIF2C, NUF2, CENPK, CENPL, BIRC5, CENPU, SGO2, KIF18A, CENPE, CENPM, CENPN, BUB1, CDCA5 |
| GO: 0000278 | Mitotic cell cycle | <0.0001[ | CENPW, NEK2, BUB1B, PBK, KIF18B, KIF11, TPX2, CENPF, NDC80, AURKA, KIF2C, NUF2, KIF15, MASTL, RAB6C, CENPE, SKA3, CDCA5 |
| GO: 0000070 | Mitotic sister chromatid segregation | <0.0001[ | SMC4, MAD2L1, NEK2, NUSAP1, KIF18B, ZWINT, NDC80, KNSTRN, SPAG5, ESPL1, KIFC1 |
| Cellular component | |||
| GO: 0005654 | Nucleoplasm | <0.0001[ | CDK1, SMC4, CENPW, RFC4, ANLN, FANCI, KPNA2, CCNB1, MAD2L1, NEK2, PRC1, UBE2T, RACGAP1, FBXO5, DTL, RAD51AP1, TOP2A, CCNA2, KIF4A, CDCA8, UBE2C, KIF23, ZWINT, CCNE2, KIF20A, CENPA, TPX2, CENPF, EZH2, OIP5, SMC2, NDC80, FOXM1, MCM6, PCNA, ACTL6A, MCM2, ATAD2, AURKA, CDC20, CDCA2, KIF2C, CENPK, CKS1B, ASF1B, HJURP, PCLAF, CENPL, FEN1, RMI2, ZNF367, BIRC5, CENPU, DBF4, MCM10, MASTL, SGO2, EXO1, CHEK1, GMNN, RAD51, NCAPG2, MCM4, CSE1L, DEK, CENPM, TOPBP1, RNASEH2A, CENPN, BUB1, SNRPD1, CDCA5, NUDCD1 |
| GO: 0000777 | Condensed chromosome kinetochore | <0.0001[ | CENPW,MAD2L1, NEK2, BUB1B, ZWINT, NDC80, KNSTRN,ERCC6L, KIF2C, NUF2, CENPK, HJURP, SPAG5, BIRC5, CENPU, SGO2, CENPM, CENPN, BUB1 |
| GO: 0000775 | Cytosol | <0.0001[ | ECT2, CDK1, SMC4, RRM2, FANCI, KPNA2, CCNB1, DLGAP5, MAD2L1, NEK2, PRC1, RACGAP1, BUB1B, NCAPG, KIF18B, FBXO5, DTL, KIF11, CDKN3, CCNA2, DEPDC1B, KIF4A, CDCA8, UBE2C, KIF23, KIF14, ZWINT, CCNE2, PTTG1, CENPA, TPX2, CENPF, OIP5, SMC2, NDC80, CKAP2L, HMMR, MCM2, MTHFD2, KNSTRN, AURKA, CDC20, ERCC6L, NCAPH, CDCA2, KIF2C, NUF2, GPSM2, CENPK, HJURP, CENPL, CDCA3, RMI2, KIF15, BIRC5, CENPU, SGO2, KIF18A, STIL, CHEK1, GMNN, ESPL1, TYMS, GMPS, RAD51, CCNB2, RAB6C, CENPE, PDCD10, CSE1L, CENPM, RNASEH2A, CENPN, BUB1, SNRPD1, PLK4, CDCA5, NUDCD1 |
| GO: 0030496 | Nucleus | <0.0001[ | PRC1, UBE2T, RACGAP1, NCAPG, PBK, KIF18B, FBXO5, DTL, CDKN3, RAD51AP1, TOP2A, CCNA2, CDCA8, KIF23, KIF14, ZWINT, H2AFZ, PTTG1, CENPA, TPX2, CENPF, EZH2, OIP5, SMC2, NDC80, FOXM1, MCM6, PCNA, ACTL6A, MCM2, ATAD2, KNSTRN, AURKA, TRIP13, DONSON, NCAPH, NUF2, HJURP, PCLAF, FEN1, DEPDC1, ZNF367, BIRC5, CENPU, DBF4, MCM10, MASTL, TCF19, KIF18A, EXO1, CHEK1, GMNN, ESPL1, UHRF1, TYMS, RAD51, CCNB2, RAB6C, CENPE, MCM4, CSE1L, DEK, TOPBP1, CENPN, SNRPD1, CDCA5, TMPO, KIFC1 |
| Molecular function | |||
| GO: 0008017 | Microtubule binding | <0.0001[ | PRC1, NUSAP1, RACGAP1, KIF18B, KIF11, FAM83D, KIF4A, KIF23, KIF14, KIF20A, SPAG5, KIF15, BIRC5, KIF18A, CENPE, KIFC1 |
| GO: 0005524 | Protein binding | <0.0001[ | ECT2, CDK1, SMC4, CENPW, CEP55, MELK, RFC4, RRM2, FANCI, KPNA2, CCNB1, DLGAP5, MAD2L1, NEK2, PRC1, NUSAP1, UBE2T, RACGAP1, BUB1B, NCAPG, PBK, TTK, KIF18B, FBXO5, DTL, CDKN3, RAD51AP1, TOP2A, FAM83D, CKS2, CCNA2, KIF4A, CDCA8, UBE2C, KIF23, KIF14, ZWINT, H2AFZ, CCNE2, PTTG1, KIF20A, CENPA, TPX2, CENPF, EZH2, OIP5, SMC2, NDC80, FOXM1, MCM6, HMMR, PCNA, ACTL6A, MCM2, MTFR2, ATAD2, KNSTRN, AURKA, CDC20, TRIP13, ERCC6L, DONSON, NCAPH, KIF2C, NUF2, GPSM2, CENPK, CKS1B, ASF1B, HJURP, PCLAF, CENPL, CDCA3, FEN1, SPAG5, DEPDC1, KIF15, BIRC5, CENPU, DBF4, MCM10, SGO2, TCF19, KIF18A, EXO1, STIL, CHEK1, GMNN, ESPL1, UHRF1, RAD51, CCNB2, FBXO45, CENPE, PDCD10, MCM4, CSE1L, SHCBP1, TOPBP1, FAM111B, BUB1, SKA3, SNRPD1, PLK4, CDCA5, NUDCD1 |
| GO: 0003777 | Microtubule motor activity | <0.0001[ | KIF18B, KIF11, KIF4A, KIF23, KIF14, KIF20A, KIF2C, KIF15, CENPE, KIFC1 |
| GO: 0005515 | ATP binding | <0.0001[ | CDK1, SMC4, MELK, RFC4, NEK2, UBE2T, BUB1B, PBK, TTK, KIF18B, KIF11, TOP2A, KIF4A, UBE2C, KIF23, KIF14, KIF20A, TPX2, SMC2, MCM6, MCM2, ATAD2, AURKA, TRIP13, ERCC6L, KIF2C, KIF15, MASTL, KIF18A, CHEK1, GMPS, RAD51, CENPE, MCM4, BUB1, PLK4, KIFC1 |
P<0.05; GO, Gene Ontology.