Literature DB >> 30962436

Nucleobase pairing and photodimerization in a biologically derived metal-organic framework nanoreactor.

Samantha L Anderson1, Peter G Boyd1, Andrzej Gładysiak1, Tu N Nguyen1, Robert G Palgrave2, Dominik Kubicki3, Lyndon Emsley3, Darren Bradshaw4, Matthew J Rosseinsky5, Berend Smit1, Kyriakos C Stylianou6.   

Abstract

Biologically derived metal-organic frameworks (bio-MOFs) are of great importance as they can be used as models for bio-mimicking and in catalysis, allowing us to gain insights into how large biological molecules function. Through rational design, here we report the synthesis of a novel bio-MOF featuring unobstructed Watson-Crick faces of adenine (Ade) pointing towards the MOF cavities. We show, through a combined experimental and computational approach, that thymine (Thy) molecules diffuse through the pores of the MOF and become base-paired with Ade. The Ade-Thy pair binding at 40-45% loading reveals that Thy molecules are packed within the channels in a way that fulfill both the Woodward-Hoffmann and Schmidt rules, and upon UV irradiation, Thy molecules dimerize into Thy<>Thy. This study highlights the utility of accessible functional groups within the pores of MOFs, and their ability to 'lock' molecules in specific positions that can be subsequently dimerized upon light irradiation, extending the use of MOFs as nanoreactors for the synthesis of molecules that are otherwise challenging to isolate.

Entities:  

Year:  2019        PMID: 30962436      PMCID: PMC6453978          DOI: 10.1038/s41467-019-09486-2

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   17.694


  8 in total

1.  Unravelling Supramolecular Photocycloaddition: Cavitand-Mediated Reactivity of 3-(Aryl)Acrylic Acids.

Authors:  Akshay Kashyap; Vasu Balraj; Vijayakumar Ramalingam; Mahesh Pattabiraman
Journal:  J Photochem Photobiol A Chem       Date:  2021-12-01       Impact factor: 4.291

Review 2.  Recent advances in nanomedicines for photodynamic therapy (PDT)-driven cancer immunotherapy.

Authors:  Bin Ji; Minjie Wei; Bin Yang
Journal:  Theranostics       Date:  2022-01-01       Impact factor: 11.600

3.  A Nanoscale Metal-Organic Framework to Mediate Photodynamic Therapy and Deliver CpG Oligodeoxynucleotides to Enhance Antigen Presentation and Cancer Immunotherapy.

Authors:  Kaiyuan Ni; Taokun Luo; Guangxu Lan; August Culbert; Yang Song; Tong Wu; Xiaomin Jiang; Wenbin Lin
Journal:  Angew Chem Int Ed Engl       Date:  2019-11-29       Impact factor: 16.823

4.  DNA-Mimicking Metal-Organic Frameworks with Accessible Adenine Faces for Complementary Base Pairing.

Authors:  Santanu Chand; Othman Alahmed; Walaa S Baslyman; Avishek Dey; Somayah Qutub; Ranajit Saha; Yuh Hijikata; Manal Alaamery; Niveen M Khashab
Journal:  JACS Au       Date:  2022-02-07

Review 5.  Development of biological metal-organic frameworks designed for biomedical applications: from bio-sensing/bio-imaging to disease treatment.

Authors:  Huai-Song Wang; Yi-Hui Wang; Ya Ding
Journal:  Nanoscale Adv       Date:  2020-07-31

6.  Reply to "Inconsistencies in the specific nucleobase pairing motif prone to photodimerization in a MOF nanoreactor".

Authors:  Samantha L Anderson; Peter G Boyd; Andrzej Gładysiak; Tu N Nguyen; Robert G Palgrave; Dominik Kubicki; Lyndon Emsley; Darren Bradshaw; Matthew J Rosseinsky; Berend Smit; Kyriakos C Stylianou
Journal:  Nat Commun       Date:  2022-08-02       Impact factor: 17.694

7.  Bioinspired Suprahelical Frameworks as Scaffolds for Artificial Photosynthesis.

Authors:  Kai Tao; Bin Xue; Shuyi Han; Ruth Aizen; Linda J W Shimon; Zhengyu Xu; Yi Cao; Deqing Mei; Wei Wang; Ehud Gazit
Journal:  ACS Appl Mater Interfaces       Date:  2020-09-29       Impact factor: 9.229

8.  Combined Layer-by-Layer/Hydrothermal Synthesis of Fe3O4@MIL-100(Fe) for Ofloxacin Adsorption from Environmental Waters.

Authors:  Michela Sturini; Constantin Puscalau; Giulia Guerra; Federica Maraschi; Giovanna Bruni; Francesco Monteforte; Antonella Profumo; Doretta Capsoni
Journal:  Nanomaterials (Basel)       Date:  2021-12-02       Impact factor: 5.076

  8 in total

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