Literature DB >> 30962348

Revised Interpretation of the Hain Lifescience GenoType MTBC To Differentiate Mycobacterium canettii and Members of the Mycobacterium tuberculosis Complex.

Chloé Loiseau1,2, Daniela Brites1,2, Irmgard Moser3, Francesc Coll4, Christine Pourcel5, Suelee Robbe-Austerman6, Vincent Escuyer7, Kimberlee A Musser7, Sharon J Peacock8, Silke Feuerriegel9,10, Thomas A Kohl9,10, Stefan Niemann9,10, Sebastien Gagneux1,2, Claudio U Köser11.   

Abstract

Using 894 phylogenetically diverse genomes of the Mycobacterium tuberculosis complex (MTBC), we simulated in silico the ability of the Hain Lifescience GenoType MTBC assay to differentiate the causative agents of tuberculosis. Here, we propose a revised interpretation of this assay to reflect its strengths (e.g., it can distinguish some strains of Mycobacterium canettii and variants of Mycobacterium bovis that are not intrinsically resistant to pyrazinamide) and limitations (e.g., Mycobacterium orygis cannot be differentiated from Mycobacterium africanum).

Entities:  

Keywords:  Mycobacterium tuberculosiszzm321990; genotyping; intrinsic antibiotic resistance

Mesh：

Year:  2019        PMID： 30962348      PMCID： PMC6535525          DOI： 10.1128/AAC.00159-19

Source DB:  PubMed          Journal:  Antimicrob Agents Chemother        ISSN： 0066-4804            Impact factor:   5.938


  25 in total

1.  Extended spectrum of antibiotic susceptibility for tuberculosis, Djibouti.

Authors:  Fériel Bouzid; Hélène Astier; Djaltou Aboubaker Osman; Emilie Javelle; Mohamed Osman Hassan; Fabrice Simon; Eric Garnotel; Michel Drancourt
Journal:  Int J Antimicrob Agents       Date:  2017-07-12       Impact factor: 5.283

2.  "Mycobacterium canettii" isolated from a human immunodeficiency virus-positive patient: first case recognized in the United States.

Authors:  Akos Somoskovi; Jillian Dormandy; Andrew R Mayrer; Martin Carter; Nancy Hooper; Max Salfinger
Journal:  J Clin Microbiol       Date:  2008-11-19       Impact factor: 5.948

3.  Mycobacterium canettii is intrinsically resistant to both pyrazinamide and pyrazinoic acid.

Authors:  Silke Feuerriegel; Claudio U Köser; Elvira Richter; Stefan Niemann
Journal:  J Antimicrob Chemother       Date:  2013-02-26       Impact factor: 5.790

Review 4.  Ecology and evolution of Mycobacterium tuberculosis.

Authors:  Sebastien Gagneux
Journal:  Nat Rev Microbiol       Date:  2018-02-19       Impact factor: 60.633

5.  Clinical characteristics of the smooth tubercle bacilli 'Mycobacterium canettii' infection suggest the existence of an environmental reservoir.

Authors:  J-L Koeck; M Fabre; F Simon; M Daffé; E Garnotel; A B Matan; P Gérôme; J-J Bernatas; Y Buisson; C Pourcel
Journal:  Clin Microbiol Infect       Date:  2010-11-02       Impact factor: 8.067

6.  Line probe assay for differentiation within Mycobacterium tuberculosis complex. Evaluation on clinical specimens and isolates including Mycobacterium pinnipedii.

Authors:  Marianne Kirstine Kjeldsen; Dorte Bek; Erik Michael Rasmussen; Anders Priemé; Vibeke Østergaard Thomsen
Journal:  Scand J Infect Dis       Date:  2009

7.  Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria.

Authors:  Eva C Boritsch; Varun Khanna; Alexandre Pawlik; Nadine Honoré; Victor H Navas; Laurence Ma; Christiane Bouchier; Torsten Seemann; Philip Supply; Timothy P Stinear; Roland Brosch
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-15       Impact factor: 11.205

8.  A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex.

Authors:  Daniela Brites; Chloé Loiseau; Fabrizio Menardo; Sonia Borrell; Maria Beatrice Boniotti; Robin Warren; Anzaan Dippenaar; Sven David Charles Parsons; Christian Beisel; Marcel A Behr; Janet A Fyfe; Mireia Coscolla; Sebastien Gagneux
Journal:  Front Microbiol       Date:  2018-11-27       Impact factor: 5.640

9.  Whole Genome Sequencing of Mycobacterium bovis Isolated From Livestock in the United States, 1989-2018.

Authors:  Kathy Orloski; Suelee Robbe-Austerman; Tod Stuber; Bill Hench; Mark Schoenbaum
Journal:  Front Vet Sci       Date:  2018-10-30

10.  Progenitor “Mycobacterium canettii” clone responsible for lymph node tuberculosis epidemic, Djibouti.

Authors:  Yann Blouin; Géraldine Cazajous; Céline Dehan; Charles Soler; Rithy Vong; Mohamed Osman Hassan; Yolande Hauck; Christian Boulais; Dina Andriamanantena; Christophe Martinaud; Émilie Martin; Christine Pourcel; Gilles Vergnaud
Journal:  Emerg Infect Dis       Date:  2014-01       Impact factor: 6.883
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  11 in total

1.  Population Structure of Mycobacterium bovis in Germany: a Long-Term Study Using Whole-Genome Sequencing Combined with Conventional Molecular Typing Methods.

Authors:  Thierry Wirth; Stefan Niemann; Irmgard Moser; Thomas A Kohl; Katharina Kranzer; Sönke Andres
Journal:  J Clin Microbiol       Date:  2020-10-21       Impact factor: 5.948

2.  How To Optimally Combine Genotypic and Phenotypic Drug Susceptibility Testing Methods for Pyrazinamide.

Authors:  Claudio U Köser; Daniela M Cirillo; Paolo Miotto
Journal:  Antimicrob Agents Chemother       Date:  2020-08-20       Impact factor: 5.191

3.  Global Distribution and Evolution of Mycobacterium bovis Lineages.

Authors:  Cristina Kraemer Zimpel; José Salvatore L Patané; Aureliano Coelho Proença Guedes; Robson F de Souza; Taiana T Silva-Pereira; Naila C Soler Camargo; Antônio F de Souza Filho; Cássia Y Ikuta; José Soares Ferreira Neto; João Carlos Setubal; Marcos Bryan Heinemann; Ana Marcia Sa Guimaraes
Journal:  Front Microbiol       Date:  2020-05-07       Impact factor: 5.640

4.  Three-reaction high-resolution melting assay for rapid differentiation of Mycobacterium tuberculosis complex members.

Authors:  Patricia Landolt; Roger Stephan; Marc J A Stevens; Simone Scherrer
Journal:  Microbiologyopen       Date:  2019-08-25       Impact factor: 3.139

5.  PCR-reverse blot hybridization assay in respiratory specimens for rapid detection and differentiation of mycobacteria in HIV-negative population.

Authors:  Qing Zhang; Heping Xiao; Liping Yan
Journal:  BMC Infect Dis       Date:  2021-03-16       Impact factor: 3.090

6.  Rapid Identification of Mycobacterium tuberculosis Complex Using Mass Spectrometry: A Proof of Concept.

Authors:  Simon Robinne; Jamal Saad; Madjid Morsli; Zelika Harouna Hamidou; Fatah Tazerart; Michel Drancourt; Sophie Alexandra Baron
Journal:  Front Microbiol       Date:  2022-03-31       Impact factor: 5.640

Review 7.  Mycobacterium bovis: From Genotyping to Genome Sequencing.

Authors:  Ana M S Guimaraes; Cristina K Zimpel
Journal:  Microorganisms       Date:  2020-05-03

8.  Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex.

Authors:  Matthias Merker; Thomas A Kohl; Ivan Barilar; Sönke Andres; Philip W Fowler; Erja Chryssanthou; Kristian Ängeby; Pontus Jureen; Danesh Moradigaravand; Julian Parkhill; Sharon J Peacock; Thomas Schön; Florian P Maurer; Timothy Walker; Claudio Köser; Stefan Niemann
Journal:  Genome Med       Date:  2020-03-06       Impact factor: 11.117

9.  An African origin for Mycobacterium bovis.

Authors:  Chloé Loiseau; Fabrizio Menardo; Abraham Aseffa; Elena Hailu; Balako Gumi; Gobena Ameni; Stefan Berg; Leen Rigouts; Suelee Robbe-Austerman; Jakob Zinsstag; Sebastien Gagneux; Daniela Brites
Journal:  Evol Med Public Health       Date:  2020-01-31

10.  TB or not TB? Definitive determination of species within the Mycobacterium tuberculosis complex in unprocessed sputum from adults with presumed multidrug-resistant tuberculosis.

Authors:  Peter M Mbelele; Elingarami Sauli; Emmanuel A Mpolya; Sagal Y Mohamed; Kennedy K Addo; Sayoki G Mfinanga; Scott K Heysell; Stellah Mpagama
Journal:  Trop Med Int Health       Date:  2021-06-24       Impact factor: 3.918
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