Literature DB >> 30959433

Comprehensive analysis of different adhesives in aerobiological sampling using optical microscopy and high-throughput DNA sequencing.

Jesús Rojo1, Andrés Núñez2, Beatriz Lara1, Beatriz Sánchez-Parra2, Diego A Moreno3, Rosa Pérez-Badia4.   

Abstract

The standardization and unification of the procedures to analyze and quantify the airborne pollen concentrations are very important topics. In this work, the effectiveness of the two most used adhesives in aerobiological sampling, silicone prepared with cyclohexane solvent (Silicone) and petroleum jelly (Vaseline), was compared under outdoor conditions. This comparison was carried out using the traditional method based on the identification and quantification by optical microscopy (OM) of the airborne pollen and the novel methodology by high-throughput sequencing analysis (HTS). Globally, the results from both methods of analysis (OM and HTS) showed a good agreement between the two adhesives tested regarding the abundance of the main pollen types present in the samples: Cupressaceae, Olea, Poaceae, Platanus, Quercus. We concluded that the results from both adhesives are comparable data. Furthermore, the comparisons between methodologies, OM vs. HTS, showed that both techniques can accurately identify the most abundant pollen types in the atmosphere for the studied periods, with a good agreement of their relative abundances especially when the airborne pollen diversity is low but showing some divergences as the number of pollen types increases.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Adhesive; Aerobiology; High-throughput DNA sequencing; Morphological analysis; Pollen

Mesh:

Substances:

Year:  2019        PMID: 30959433     DOI: 10.1016/j.jenvman.2019.03.116

Source DB:  PubMed          Journal:  J Environ Manage        ISSN: 0301-4797            Impact factor:   6.789


  1 in total

1.  DNA metabarcoding using nrITS2 provides highly qualitative and quantitative results for airborne pollen monitoring.

Authors:  Marcel Polling; Melati Sin; Letty A de Weger; Arjen G C L Speksnijder; Mieke J F Koenders; Hugo de Boer; Barbara Gravendeel
Journal:  Sci Total Environ       Date:  2021-09-21       Impact factor: 7.963

  1 in total

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