Literature DB >> 30956418

Estimation of nuclear DNA content and its variation among Indian Tea accessions by flow cytometry.

Suman Sharma1, Sandeep Kaushik2, Soom Nath Raina3.   

Abstract

Nuclear DNA content and genome size variation among 36 Indian tea accessions were analyzed by flow cytometry. Initial standardization of protocols for isolation of nuclei, DNA staining and selection of an internal standard for tea accessions which have significantly high amount of phenolic secondary metabolites in their cytosol was carried out. Results obtained revealed that 2C DNA content of Indian tea is 7.46 pg which corresponds to 1C genome size of 3673 Mb. Inter accession variation in 2C DNA content was also observed among 35 diploid taxa ranging from 7.23 to 7.73 pg which was significant at 1% probability level. The 2C DNA content of triploid (UPASI 3) was observed to be 11.47 pg which is concurrent with the expected value. Results obtained showed that Assam and Cambod type tea accession have higher 2C DNA content of 7.73 pg whereas Assam Cambod hybrids and Assam China hybrids have reduction in DNA content with 2C amounts, 7.23 and 7.32 pg DNA respectively. The present study suggests that the species involved in origin of Indian tea must have differed in their genome sizes owing to significant inter accession variation in nuclear DNA content.

Entities:  

Keywords:  2C DNA; Genome size; Indian Tea; Internal standard

Year:  2018        PMID: 30956418      PMCID: PMC6419702          DOI: 10.1007/s12298-018-0587-3

Source DB:  PubMed          Journal:  Physiol Mol Biol Plants        ISSN: 0974-0430


  27 in total

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Journal:  Am J Bot       Date:  1999-05       Impact factor: 3.844

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Authors:  J Dolezel; J Bartos; H Voglmayr; J Greilhuber
Journal:  Cytometry A       Date:  2003-02       Impact factor: 4.355

4.  Is small indel bias a determinant of genome size?

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5.  Intra- and interspecific variation in DNA content in Cistus (Cistaceae).

Authors:  Philippe Ellul; Monica Boscaiu; Oscar Vicente; Vicente Moreno; Josep A Rosselló
Journal:  Ann Bot       Date:  2002-09       Impact factor: 4.357

6.  Do Plants Have a One-Way Ticket to Genomic Obesity?

Authors:  J. L. Bennetzen; E. A. Kellogg
Journal:  Plant Cell       Date:  1997-09       Impact factor: 11.277

7.  Mechanisms of recent genome size variation in flowering plants.

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Review 8.  Intraspecific variation in genome size in angiosperms: identifying its existence.

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Review 9.  Mechanisms and control of rapid genomic changes in flax.

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Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

10.  Analysis of nuclear DNA content in Capsicum (Solanaceae) by flow cytometry and Feulgen densitometry.

Authors:  Eduardo A Moscone; Monika Baranyi; Irma Ebert; Johann Greilhuber; Friedrich Ehrendorfer; Armando T Hunziker
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  2 in total

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Review 2.  Tea plant genomics: achievements, challenges and perspectives.

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  2 in total

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