Literature DB >> 30954285

The Promise of Paleogenomics Beyond Our Own Species.

Katherine Brunson1, David Reich2.   

Abstract

Paleogenomics, also known as genome-wide ancient DNA analysis, is transforming our understanding of the human past, but has been much less intensively used to understand the history of other species. However, paleogenomic studies of non-human animals and plants have the potential to address an equally rich range of evolutionary, paleoecological, paleoenvironmental, and archaeological research questions. Three recent case studies of cave bears, horses, and maize provide examples of the ways that paleogenomics can be used to examine potential causes of extinctions and dynamic processes of domestication. Much more research in these areas is needed, and we conclude by highlighting key future directions.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  cave bear; domestication; horse; maize; paleogenomics

Mesh:

Substances:

Year:  2019        PMID: 30954285     DOI: 10.1016/j.tig.2019.02.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  9 in total

1.  Ancient genomes reveal early Andean farmers selected common beans while preserving diversity.

Authors:  Emiliano Trucchi; Andrea Benazzo; Martina Lari; Sanne Boessenkool; Roberto Papa; Giorgio Bertorelle; Alice Iob; Stefania Vai; Laura Nanni; Elisa Bellucci; Elena Bitocchi; Francesca Raffini; Chunming Xu; Scott A Jackson; Verónica Lema; Pilar Babot; Nurit Oliszewski; Adolfo Gil; Gustavo Neme; Catalina Teresa Michieli; Monica De Lorenzi; Lucio Calcagnile; David Caramelli; Bastiaan Star; Hugo de Boer
Journal:  Nat Plants       Date:  2021-02-08       Impact factor: 15.793

2.  Disease as a Factor in the African Archaeological Record.

Authors:  Susan Pfeiffer
Journal:  Afr Archaeol Rev       Date:  2020-08-25

3.  Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes.

Authors:  K Yarlagadda; A J Zachwieja; A de Flamingh; T Phungviwatnikul; A G Rivera-Colón; C Roseman; L Shackelford; K S Swanson; R S Malhi
Journal:  Proc Biol Sci       Date:  2022-05-04       Impact factor: 5.530

4.  Inference of natural selection from ancient DNA.

Authors:  Marianne Dehasque; María C Ávila-Arcos; David Díez-Del-Molino; Matteo Fumagalli; Katerina Guschanski; Eline D Lorenzen; Anna-Sapfo Malaspinas; Tomas Marques-Bonet; Michael D Martin; Gemma G R Murray; Alexander S T Papadopulos; Nina Overgaard Therkildsen; Daniel Wegmann; Love Dalén; Andrew D Foote
Journal:  Evol Lett       Date:  2020-03-18

5.  Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph.

Authors:  Rui Martiniano; Erik Garrison; Eppie R Jones; Andrea Manica; Richard Durbin
Journal:  Genome Biol       Date:  2020-09-17       Impact factor: 13.583

6.  A 14,000-year-old genome sheds light on the evolution and extinction of a Pleistocene vulture.

Authors:  Per G P Ericson; Martin Irestedt; Dario Zuccon; Petter Larsson; Jean-Luc Tison; Steven D Emslie; Anders Götherström; Julian P Hume; Lars Werdelin; Yanhua Qu
Journal:  Commun Biol       Date:  2022-08-23

7.  Imputation of Ancient Whole Genome Sus scrofa DNA Introduces Biases Toward Main Population Components in the Reference Panel.

Authors:  J A M Erven; C Çakirlar; D G Bradley; D C M Raemaekers; O Madsen
Journal:  Front Genet       Date:  2022-07-12       Impact factor: 4.772

Review 8.  Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics.

Authors:  Gillian P McHugo; Michael J Dover; David E MacHugh
Journal:  BMC Biol       Date:  2019-12-02       Impact factor: 7.431

Review 9.  The past, present and future of ancient bacterial DNA.

Authors:  Nicolas Arning; Daniel J Wilson
Journal:  Microb Genom       Date:  2020-07
  9 in total

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