Literature DB >> 30953683

Systems biology based metabolic engineering for non-natural chemicals.

Alessandra Biz1, Scott Proulx1, Zhiqing Xu1, Kavya Siddartha1, Alex Mulet Indrayanti1, Radhakrishnan Mahadevan2.   

Abstract

Production of chemicals in microorganisms is no longer restricted to products arising from native metabolic potential. In this review, we highlight the evolution of metabolic engineering studies, from the production of natural chemicals fermented from biomass hydrolysates, to the engineering of microorganisms for the production of non-natural chemicals. Advances in synthetic biology are accelerating the successful development of microbial cell factories to directly produce value-added chemicals. Here we outline the emergence of novel computational tools for the creation of synthetic pathways, for designing artificial enzymes for non-natural reactions and for re-wiring host metabolism to increase the metabolic flux to products. We also highlight exciting opportunities for applying directed evolution of enzymes, dynamic control of growth and production, growth-coupling strategies as well as decoupled strategies based on orthogonal pathways in the context of non-natural chemicals.
Copyright © 2019 Elsevier Inc. All rights reserved.

Keywords:  Directed evolution; Dynamic control; Flux balance analysis; Genome-scale models; Growth-coupled production; In-silico pathway design; Non-natural chemicals; Orthogonality; Stems biology; de novo protein engineering

Mesh:

Year:  2019        PMID: 30953683     DOI: 10.1016/j.biotechadv.2019.04.001

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  7 in total

Review 1.  Synthetic small regulatory RNAs in microbial metabolic engineering.

Authors:  Wen-Hai Xie; Hong-Kuan Deng; Jie Hou; Li-Juan Wang
Journal:  Appl Microbiol Biotechnol       Date:  2020-11-17       Impact factor: 4.813

Review 2.  Rebooting life: engineering non-natural nucleic acids, proteins and metabolites in microorganisms.

Authors:  Shriya Hans; Nilesh Kumar; Nisarg Gohil; Khushal Khambhati; Gargi Bhattacharjee; Shalini S Deb; Rupesh Maurya; Vinod Kumar; Shamlan M S Reshamwala; Vijai Singh
Journal:  Microb Cell Fact       Date:  2022-05-28       Impact factor: 6.352

3.  Engineering Escherichia coli for the utilization of ethylene glycol.

Authors:  Aditya Vikram Pandit; Emma Harrison; Radhakrishnan Mahadevan
Journal:  Microb Cell Fact       Date:  2021-01-22       Impact factor: 5.328

4.  Characterizing and engineering promoters for metabolic engineering of Ogataea polymorpha.

Authors:  Chunxiao Yan; Wei Yu; Xiaoxin Zhai; Lun Yao; Xiaoyu Guo; Jiaoqi Gao; Yongjin J Zhou
Journal:  Synth Syst Biotechnol       Date:  2021-12-15

Review 5.  Cell-derived membrane biomimetic nanocarriers for targeted therapy of pulmonary disease.

Authors:  Xixi Zheng; Tianyuan Zhang; Ting Huang; Yanjun Zhou; Jianqing Gao
Journal:  Int J Pharm       Date:  2022-04-18       Impact factor: 6.510

Review 6.  Consolidated Bioprocessing: Synthetic Biology Routes to Fuels and Fine Chemicals.

Authors:  Alec Banner; Helen S Toogood; Nigel S Scrutton
Journal:  Microorganisms       Date:  2021-05-18

7.  Design of stable and self-regulated microbial consortia for chemical synthesis.

Authors:  Xianglai Li; Zhao Zhou; Wenna Li; Yajun Yan; Xiaolin Shen; Jia Wang; Xinxiao Sun; Qipeng Yuan
Journal:  Nat Commun       Date:  2022-03-23       Impact factor: 17.694

  7 in total

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