Literature DB >> 30941727

Karyotype and B chromosome variation in Lilium amabile Palibin.

Truong Xuan Nguyen1,2, Bo Ram Kim3, Doo-Ri Park4, Young-Kyu Kim3, Viet-Yen Nguyen3, Jong-Kook Na5, Nam-Soo Kim6,7, Jong-Hwa Kim8,9.   

Abstract

OBJECTIVE: Lilium amabile Palibin (2n = 2x = 24) is an endemic lily species in Korea. B chromosomes are supernumerary chromosomes and the presence of B chromosome in L. amabile was known by previous researches. The current research was conducted to characterize the genetical and cytological features of the B chromosome plants in L. amabile.
METHODS: Karyotype and B chromosome cytotype analyses were carried out among 135 L. amabile accessions that were collected from six geographical locations in Korea using conventional aceto-carmine staining as well as FISH technique with ribosomal RNA gene probes.
RESULTS: The karyotype of L. amabile genome consisted of two large metacentric, four intermediate subtelocentric, and six intermediate to small acrocentric chromosomes in which chromosomes 1, 6 and 7 carried the 45S rRNA gene loci and chromosome 3 carried the 5S rRNA gene. There were 4 types of B chromosomes, two large B chromosomes and two small B chromosomes. The ribosomal RNA gene loci were not present in the B chromosomes. The 135 accessions were classified into 13 cytotypes including diploids and different B chromosome aneuploids. Among the aneuploids, the most frequent cytotype was 24 + 1B, which was followed by 24 + 2B, 24 + 1b, 24 + 1B + 2b, 24 + 1B + 4b, and 24 + 2B + 4b.
CONCLUSION: The karyotype of L. amabile was consistent with other species in the genus Lilium without polyploids. The B chromosome cytotypes were highly variable and the occurrences of different cytotypes were random among the six populations, implying that the B and b chromosome occurrence was random in each population.

Entities:  

Keywords:  B chromosome; Cytotypes; FISH; Karyotype; Lilium amabile

Mesh:

Substances:

Year:  2019        PMID: 30941727     DOI: 10.1007/s13258-019-00807-9

Source DB:  PubMed          Journal:  Genes Genomics        ISSN: 1976-9571            Impact factor:   1.839


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6.  Origin and evolution of B chromosomes in the cichlid fish Astatotilapia latifasciata based on integrated genomic analyses.

Authors:  Guilherme T Valente; Matthew A Conte; Bruno E A Fantinatti; Diogo C Cabral-de-Mello; Robson F Carvalho; Marcelo R Vicari; Thomas D Kocher; Cesar Martins
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7.  Localization of the 5S and 45S rDNA sites and cpDNA sequence analysis in species of the Quadrifaria group of Paspalum (Poaceae, Paniceae).

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8.  B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.).

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Review 9.  Nucleolar organizer regions: genomic 'dark matter' requiring illumination.

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  2 in total

1.  Cytological variations and long terminal repeat (LTR) retrotransposon diversities among diploids and B-chromosome aneuploids in Lilium amabile Palibin.

Authors:  Sung-Il Lee; Truong Xuan Nguyen; Jong-Hwa Kim; Nam-Soo Kim
Journal:  Genes Genomics       Date:  2019-05-03       Impact factor: 1.839

2.  De novo transcriptome sequencing and gene expression profiling with/without B-chromosome plants of Lilium amabile.

Authors:  Doori Park; Jong-Hwa Kim; Nam-Soo Kim
Journal:  Genomics Inform       Date:  2019-09-16
  2 in total

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