Literature DB >> 30927887

Absolute diffusion measurements of active enzyme solutions by NMR.

Jan-Philipp Günther1, Günter Majer1, Peer Fischer1.   

Abstract

The diffusion of enzymes is of fundamental importance for many biochemical processes. Enhanced or directed enzyme diffusion can alter the accessibility of substrates and the organization of enzymes within cells. Several studies based on fluorescence correlation spectroscopy report enhanced diffusion of enzymes upon interaction with their substrate or inhibitor. In this context, major importance is given to the enzyme fructose-bisphosphate aldolase, for which enhanced diffusion has been reported even though the catalysed reaction is endothermic. Additionally, enhanced diffusion of tracer particles surrounding the active aldolase enzymes has been reported. These studies suggest that active enzymes can act as chemical motors that self-propel and give rise to enhanced diffusion. However, fluorescence studies of enzymes can, despite several advantages, suffer from artefacts. Here, we show that the absolute diffusion coefficients of active enzyme solutions can be determined with Pulsed Field Gradient Nuclear Magnetic Resonance (PFG-NMR). The advantage of PFG-NMR is that the motion of the molecule of interest is directly observed in its native state without the need for any labelling. Furthermore, PFG-NMR is model-free and thus yields absolute diffusion constants. Our PFG-NMR experiments of solutions containing active fructose-bisphosphate aldolase from rabbit muscle do not show any diffusion enhancement for the active enzymes, nor the surrounding molecules. Additionally, we do not observe any diffusion enhancement of aldolase in the presence of its inhibitor pyrophosphate.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 30927887     DOI: 10.1063/1.5086427

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  A Thermodynamic Limit on the Role of Self-Propulsion in Enhanced Enzyme Diffusion.

Authors:  Mudong Feng; Michael K Gilson
Journal:  Biophys J       Date:  2019-04-11       Impact factor: 4.033

2.  Displacement Statistics of Unhindered Single Molecules Show no Enhanced Diffusion in Enzymatic Reactions.

Authors:  Alexander A Choi; Ha H Park; Kun Chen; Rui Yan; Wan Li; Ke Xu
Journal:  J Am Chem Soc       Date:  2022-03-08       Impact factor: 15.419

Review 3.  Self-Propulsion Strategies for Artificial Cell-Like Compartments.

Authors:  Ibon Santiago; Friedrich C Simmel
Journal:  Nanomaterials (Basel)       Date:  2019-11-25       Impact factor: 5.076

4.  Master curve of boosted diffusion for 10 catalytic enzymes.

Authors:  Ah-Young Jee; Tsvi Tlusty; Steve Granick
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-09       Impact factor: 11.205

Review 5.  Perspective: a stirring role for metabolism in cells.

Authors:  José Losa; Simeon Leupold; Diego Alonso-Martinez; Petteri Vainikka; Sebastian Thallmair; Katarzyna M Tych; Siewert J Marrink; Matthias Heinemann
Journal:  Mol Syst Biol       Date:  2022-04       Impact factor: 11.429

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.