Literature DB >> 30926570

Genome Annotator Light (GAL): A Docker-based package for genome analysis and visualization.

Arijit Panda1, Narendrakumar M Chaudhari2, Sucheta Tripathy3.   

Abstract

Next generation sequencing techniques produce enormous data but its analysis and visualization remains a big challenge. To address this, we have developed Genome Annotator Light(GAL), a Docker based package for genome analysis and data visualization. GAL integrated several existing tools and in-house programs inside a Docker Container for systematic analysis and visualization of genomes through web browser. GAL takes varieties of input types ranging from raw Fasta files to fully annotated files, processes them through a standard annotation pipeline and visualizes on a web browser. Comparative genomic analysis is performed automatically within a given taxonomic class. GAL creates interactive genome browser with clickable genomic feature tracks; local BLAST-able database; query page, on-fly downstream data analysis using EMBOSS etc. Overall, GAL is an extremely convenient, portable and platform independent. Fully integrated web-resources can be easily created and deployed, e.g. www.eumicrobedb.org/cglab, for our in-house genomes. GAL is freely available at https://hub.docker.com/u/cglabiicb/.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Docker; EMBOSS; Genome analysis; Genome browser; Visualization

Year:  2019        PMID: 30926570     DOI: 10.1016/j.ygeno.2019.03.012

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  1 in total

Review 1.  Genome annotation of disease-causing microorganisms.

Authors:  Yibo Dong; Chang Li; Kami Kim; Liwang Cui; Xiaoming Liu
Journal:  Brief Bioinform       Date:  2021-03-22       Impact factor: 11.622

  1 in total

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