Literature DB >> 30926470

A comprehensive review of feature based methods for drug target interaction prediction.

Kanica Sachdev1, Manoj Kumar Gupta2.   

Abstract

Drug target interaction is a prominent research area in the field of drug discovery. It refers to the recognition of interactions between chemical compounds and the protein targets in the human body. Wet lab experiments to identify these interactions are expensive as well as time consuming. The computational methods of interaction prediction help limit the search space for these experiments. These computational methods can be divided into ligand based approaches, docking approaches and chemogenomic approaches. In this review, we aim to describe the various feature based chemogenomic methods for drug target interaction prediction. It provides a comprehensive overview of the various techniques, datasets, tools and metrics. The feature based methods have been categorized, explained and compared. A novel framework for drug target interaction prediction has also been proposed that aims to improve the performance of existing methods. To the best of our knowledge, this is the first comprehensive review focusing only on feature based methods of drug target interaction.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Drug target interaction; Drugs; Feature based techniques; Proteins; Targets

Year:  2019        PMID: 30926470     DOI: 10.1016/j.jbi.2019.103159

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  16 in total

1.  BoT-Net: a lightweight bag of tricks-based neural network for efficient LncRNA-miRNA interaction prediction.

Authors:  Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Christoph Zehe; Johan Trygg; Andreas Dengel; Sheraz Ahmed
Journal:  Interdiscip Sci       Date:  2022-08-10       Impact factor: 3.492

2.  Text Mining Protocol to Retrieve Significant Drug-Gene Interactions from PubMed Abstracts.

Authors:  Oviya Ramalakshmi Iyyappan; Sharanya Manoharan; Sadhanha Anand; Dheepa Anand; Manonmani Alvin Jose; Raja Ravi Shanker
Journal:  Methods Mol Biol       Date:  2022

3.  Promoting Angiogenesis Effect and Molecular Mechanism of Isopropyl Caffeate (KYZ), a Novel Metabolism-Derived Candidate Drug, Based on Integrated Network Pharmacology and Transgenic Zebrafish Models.

Authors:  Haotian Kong; Songsong Wang; Yougang Zhang; Yangtengjiao Zhang; Qiuxia He; Rong Dong; Xiaohui Zheng; Kechun Liu; Liwen Han
Journal:  Front Pharmacol       Date:  2022-06-02       Impact factor: 5.988

4.  Using BERT to identify drug-target interactions from whole PubMed.

Authors:  Jehad Aldahdooh; Markus Vähä-Koskela; Jing Tang; Ziaurrehman Tanoli
Journal:  BMC Bioinformatics       Date:  2022-06-21       Impact factor: 3.307

5.  Binding affinity prediction for binary drug-target interactions using semi-supervised transfer learning.

Authors:  Betsabeh Tanoori; Mansoor Zolghadri Jahromi; Eghbal G Mansoori
Journal:  J Comput Aided Mol Des       Date:  2021-06-30       Impact factor: 3.686

6.  Affinity2Vec: drug-target binding affinity prediction through representation learning, graph mining, and machine learning.

Authors:  Maha A Thafar; Mona Alshahrani; Somayah Albaradei; Takashi Gojobori; Magbubah Essack; Xin Gao
Journal:  Sci Rep       Date:  2022-03-19       Impact factor: 4.379

7.  DTiGEMS+: drug-target interaction prediction using graph embedding, graph mining, and similarity-based techniques.

Authors:  Maha A Thafar; Rawan S Olayan; Haitham Ashoor; Somayah Albaradei; Vladimir B Bajic; Xin Gao; Takashi Gojobori; Magbubah Essack
Journal:  J Cheminform       Date:  2020-06-29       Impact factor: 5.514

8.  Identifying GPCR-drug interaction based on wordbook learning from sequences.

Authors:  Pu Wang; Xiaotong Huang; Wangren Qiu; Xuan Xiao
Journal:  BMC Bioinformatics       Date:  2020-04-20       Impact factor: 3.169

9.  DTI-SNNFRA: Drug-target interaction prediction by shared nearest neighbors and fuzzy-rough approximation.

Authors:  Sk Mazharul Islam; Sk Md Mosaddek Hossain; Sumanta Ray
Journal:  PLoS One       Date:  2021-02-19       Impact factor: 3.240

Review 10.  Machine learning approaches and databases for prediction of drug-target interaction: a survey paper.

Authors:  Maryam Bagherian; Elyas Sabeti; Kai Wang; Maureen A Sartor; Zaneta Nikolovska-Coleska; Kayvan Najarian
Journal:  Brief Bioinform       Date:  2021-01-18       Impact factor: 11.622

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