Literature DB >> 30920136

The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.

Caragh P Stapleton1, Andreas Heinzel2, Weihua Guan3, Peter J van der Most4, Jessica van Setten5, Graham M Lord6,7,8, Brendan J Keating9, Ajay K Israni10, Martin H de Borst11, Stephan J L Bakker11, Harold Snieder4, Michael E Weale12, Florence Delaney6,7, Maria P Hernandez-Fuentes6, Roman Reindl-Schwaighofer2, Rainer Oberbauer2, Pamala A Jacobson13, Patrick B Mark14, Fiona A Chapman14, Paul J Phelan15, Claire Kennedy16, Donal Sexton16, Susan Murray16, Alan Jardine14, Jamie P Traynor14, Amy Jayne McKnight17, Alexander P Maxwell17, Laura J Smyth17, William S Oetting13, Arthur J Matas18, Roslyn B Mannon19, David P Schladt20, David N Iklé21, Gianpiero L Cavalleri1, Peter J Conlon15,22.   

Abstract

Genetic variation across the human leukocyte antigen loci is known to influence renal-transplant outcome. However, the impact of genetic variation beyond the human leukocyte antigen loci is less clear. We tested the association of common genetic variation and clinical characteristics, from both the donor and recipient, with posttransplant eGFR at different time-points, out to 5 years posttransplantation. We conducted GWAS meta-analyses across 10 844 donors and recipients from five European ancestry cohorts. We also analyzed the impact of polygenic risk scores (PRS), calculated using genetic variants associated with nontransplant eGFR, on posttransplant eGFR. PRS calculated using the recipient genotype alone, as well as combined donor and recipient genotypes were significantly associated with eGFR at 1-year posttransplant. Thirty-two percent of the variability in eGFR at 1-year posttransplant was explained by our model containing clinical covariates (including weights for death/graft-failure), principal components and combined donor-recipient PRS, with 0.3% contributed by the PRS. No individual genetic variant was significantly associated with eGFR posttransplant in the GWAS. This is the first study to examine PRS, composed of variants that impact kidney function in the general population, in a posttransplant context. Despite PRS being a significant predictor of eGFR posttransplant, the effect size of common genetic factors is limited compared to clinical variables.
© 2019 The American Society of Transplantation and the American Society of Transplant Surgeons.

Entities:  

Keywords:  basic (laboratory) research/science; clinical research/practice; genetics; genomics; glomerular filtration rate (GFR); kidney transplantation/nephrology; microarray/gene array; molecular biology: DNA

Mesh:

Substances:

Year:  2019        PMID: 30920136      PMCID: PMC6989089          DOI: 10.1111/ajt.15326

Source DB:  PubMed          Journal:  Am J Transplant        ISSN: 1600-6135            Impact factor:   8.086


  31 in total

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4.  Single Nucleotide Polymorphisms and Long-Term Clinical Outcome in Renal Transplant Patients: A Validation Study.

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Journal:  Am J Transplant       Date:  2016-09-19       Impact factor: 8.086

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8.  Second-generation PLINK: rising to the challenge of larger and richer datasets.

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Journal:  Gigascience       Date:  2015-02-25       Impact factor: 6.524

9.  Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.

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10.  Polygenic risk scores for major depressive disorder and neuroticism as predictors of antidepressant response: Meta-analysis of three treatment cohorts.

Authors:  Joey Ward; Nicholas Graham; Rona J Strawbridge; Amy Ferguson; Gregory Jenkins; Wenan Chen; Karen Hodgson; Mark Frye; Richard Weinshilboum; Rudolf Uher; Cathryn M Lewis; Joanna Biernacka; Daniel J Smith
Journal:  PLoS One       Date:  2018-09-21       Impact factor: 3.240

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