| Literature DB >> 30920136 |
Caragh P Stapleton1, Andreas Heinzel2, Weihua Guan3, Peter J van der Most4, Jessica van Setten5, Graham M Lord6,7,8, Brendan J Keating9, Ajay K Israni10, Martin H de Borst11, Stephan J L Bakker11, Harold Snieder4, Michael E Weale12, Florence Delaney6,7, Maria P Hernandez-Fuentes6, Roman Reindl-Schwaighofer2, Rainer Oberbauer2, Pamala A Jacobson13, Patrick B Mark14, Fiona A Chapman14, Paul J Phelan15, Claire Kennedy16, Donal Sexton16, Susan Murray16, Alan Jardine14, Jamie P Traynor14, Amy Jayne McKnight17, Alexander P Maxwell17, Laura J Smyth17, William S Oetting13, Arthur J Matas18, Roslyn B Mannon19, David P Schladt20, David N Iklé21, Gianpiero L Cavalleri1, Peter J Conlon15,22.
Abstract
Genetic variation across the human leukocyte antigen loci is known to influence renal-transplant outcome. However, the impact of genetic variation beyond the human leukocyte antigen loci is less clear. We tested the association of common genetic variation and clinical characteristics, from both the donor and recipient, with posttransplant eGFR at different time-points, out to 5 years posttransplantation. We conducted GWAS meta-analyses across 10 844 donors and recipients from five European ancestry cohorts. We also analyzed the impact of polygenic risk scores (PRS), calculated using genetic variants associated with nontransplant eGFR, on posttransplant eGFR. PRS calculated using the recipient genotype alone, as well as combined donor and recipient genotypes were significantly associated with eGFR at 1-year posttransplant. Thirty-two percent of the variability in eGFR at 1-year posttransplant was explained by our model containing clinical covariates (including weights for death/graft-failure), principal components and combined donor-recipient PRS, with 0.3% contributed by the PRS. No individual genetic variant was significantly associated with eGFR posttransplant in the GWAS. This is the first study to examine PRS, composed of variants that impact kidney function in the general population, in a posttransplant context. Despite PRS being a significant predictor of eGFR posttransplant, the effect size of common genetic factors is limited compared to clinical variables.Entities:
Keywords: basic (laboratory) research/science; clinical research/practice; genetics; genomics; glomerular filtration rate (GFR); kidney transplantation/nephrology; microarray/gene array; molecular biology: DNA
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Year: 2019 PMID: 30920136 PMCID: PMC6989089 DOI: 10.1111/ajt.15326
Source DB: PubMed Journal: Am J Transplant ISSN: 1600-6135 Impact factor: 8.086