| Literature DB >> 30906833 |
Jun Chen1, Wenbing Zhang1, Jinzhou He1, Run Zhang1, Yinqiang Cao1, Xing Liu1,2.
Abstract
Pseudoachondroplasia (PSACH) is a relatively common skeletal dysplasia characterized by disproportionate short stature, joint laxity, early-onset osteoarthrosis, and dysplasia of the spine, epiphysis, and metaphysis. It is known as an autosomal dominant disease which results exclusively from mutations in the gene for Cartilage Oligomeric Matrix Protein (COMP). We have identified a five year old Chinese boy who was diagnosed as pseudoachondroplasia according to clinical manifestations and X-ray symptoms. His mother seems like another effected individual because of the apparent short stature. Genomic DNA was extracted from peripheral blood lymphocytes. DNA sequencing analysis of the COMP gene revealed a heterozygous mutation (c.1219 T > C,p.Cys407Arg) in the patient. His mother was also affected with the same genetic change. Mutations in COMP gene is proved to change the Cartilage Oligomeric Matrix Protein. This missense mutation (c.1219 T > C) has not been reported before and it is not belongs to polymorphism sites. Our results extend the spectrum of mutations in COMP gene leading to pseudoachondroplasia.Entities:
Keywords: COMP; Novel mutation; Pseudoachondroplasia; Skeletal dysplasia; Therapy
Year: 2018 PMID: 30906833 PMCID: PMC6411627 DOI: 10.1016/j.gendis.2018.02.004
Source DB: PubMed Journal: Genes Dis ISSN: 2352-3042
COMP mutations in pseudoachondroplasia to date.
| Exon | DNA change | Protein change | COMP domain | Reference |
|---|---|---|---|---|
| 5 | c.500G > A | Gly167Glu | EGF-like 4 | |
| 7 | c.700C > T | Pro234Ser | EGF-like 4 | |
| 7 | c.772G > C | Gly258Arg | EGF-like 4 | |
| 8 | c.806 A > G | Asp269Gly | TSP type-3 1 | |
| 8 | c.811G > C | Asp271His | TSP type-3 1 | |
| 8 | c.812 A > T | Asp271Val | TSP type-3 1 | |
| 8 | c.815 T > C | Leu272Pro | TSP type-3 1 | |
| 8 | c.818 A > C | Asp273Ala | TSP type-3 1 | |
| 8 | c.868G > A | Asp290Asn | TSP type-3 1 | |
| 8 | c.869 A > G | Asp290Gly | TSP type-3 1 | |
| 8 | c.876C > G | Cys292Trp | TSP type-3 1 | |
| 8 | c.893C > T | Ser298Leu | TSP type-3 1 | |
| 8 | c.895G > A | Gly299Arg | TSP type-3 1 | |
| 8 | c.895G > C | Gly299Arg | TSP type-3 1 | |
| 9 | c.925G > A | Gly309Arg | TSP type-3 2 | |
| 9 | c.925G > C | Gly309Arg | TSP type-3 2 | |
| 9 | c.976G > A | Asp326Asn | TSP type-3 2 | |
| 9 | c.976G > T | Asp326Tyr | TSP type-3 2 | |
| 9 | c.982 T > C | Cys328Arg | TSP type-3 2 | |
| 10 | c.1021_1026delGAGGAC | del 6 bp codon 341 | TSP type-3 3 | |
| 10 | c.1023_1025delGGA | del 3 bp codon 341 | TSP type-3 3 | |
| 10 | c.1024G > T | Asp342Tyr | TSP type-3 3 | |
| 10 | c.1042 T > C | Cys348Arg | TSP type-3 3 | |
| 10 | c.1046 A > G | Asp349Gly | TSP type-3 3 | |
| 10 | c.1052G > A | Cys351Tyr | TSP type-3 3 | |
| 10 | c.1111 T > A | Cys371Ser | TSP type-3 4 | |
| 10 | c.1120_1122delGAC | del 3 bp codon 373 | TSP type-3 4 | |
| 10 | c.1127 A > T | Asp376Val | TSP type-3 4 | |
| 10 | c.1133 A > T | Asp378Val | TSP type-3 4 | |
| 10 | c.1159 T > C | Cys387Arg | TSP type-3 4 | |
| 10 | c.1159 T > G | Cys387Gly | TSP type-3 4 | |
| 10 | c.1160_1162delGCC | del 3 bp codon 387 | TSP type-3 4 | |
| 10 | c.1170_1181delACCCAACTCAGAinsTGT | del 12 bp/ins 3 bp codon 390 | TSP type-3 4 | |
| 11 | c.1183_1191delCAGAAGGAC | del 9 bp codon 395 | TSP type-3 4 | |
| 11 | c.1189G > T | Asp397Tyr | TSP type-3 5 | |
| 11 | c.1205_1212delGTATAGGGinsTCTGT | del 8 bp/ins 5 bp codon 402 | TSP type-3 5 | |
| 11 | c.1220G > A | Cys407Tyr | TSP type-3 5 | |
| 11 | c.1280G > A | Gly427Glu | TSP type-3 6 | |
| 12 | c.1310 A > G | Asp437Gly | TSP type-3 6 | |
| 12 | c.1318G > A | Gly440Arg | TSP type-3 6 | |
| 12 | c.1318G > C | Gly440Arg | TSP type-3 6 | |
| 12 | c.1319G > A | Gly440Glu | TSP type-3 6 | |
| 12 | c.1336G > A | Asp446Asn | TSP type-3 6 | |
| 12 | c.1336G > C | Asp446His | TSP type-3 6 | |
| 12 | c.1343G > C | Cys448Ser | TSP type-3 6 | |
| 13 | c.1345_1347delCCC | del 3 bp codon 449 | TSP type-3 6 | |
| 13 | c.1345C > A | Pro449Thr | TSP type-3 6 | |
| 13 | c.1352_1353insTGTCCCTGG | ins 9 bp codon 451 | TSP type-3 6 | |
| 13 | c.1359C > A | Asn453Lys | TSP type-3 6 | |
| 13 | c.1360 A > C | Ser454Arg | TSP type-3 6 | |
| 13 | c.1366_1368delCAG | del 3 bp codon 456 | TSP type-3 6 | |
| 13 | c.1371_1373delGGA | del 3 bp codon 457 | TSP type-3 7 | |
| 13 | c.1375_1377delTCA | del 3 bp codon 459 | TSP type-3 7 | |
| 13 | c.1393G > A | Gly465Ser | TSP type-3 7 | |
| 13 | c.1393G > C | Gly465Arg | TSP type-3 7 | |
| 13 | c.1393G > T | Gly465Cys | TSP type-3 7 | |
| 13 | c.1394G > A | Gly465Asp | TSP type-3 7 | |
| 13 | c.1394G > T | Gly465Val | TSP type-3 7 | |
| 13 | c.1403G > A | Cys468Tyr | TSP type-3 7 | |
| 13 | c.1411_1419delGACGACGAC | del 9 bp codon 471 | TSP type-3 7 | |
| 13 | c.1412 A > C | Asp471Ala | TSP type-3 7 | |
| 13 | c.1412 A > G | Asp471Gly | TSP type-3 7 | |
| 13 | c.1414_1419delGACGAC | del 6 bp codon 472 | TSP type-3 7 | |
| 13 | c.1414_1419dupGACGAC | ins 6 bp codon 472 | TSP type-3 7 | |
| 13 | c.1414G > C | Asp472His | TSP type-3 7 | |
| 13 | c.1414G > T | Asp472Tyr | TSP type-3 7 | |
| 13 | c.1417_1419delGAC | del 3 bp codon 471 | TSP type-3 7 | |
| 13 | c.1417G > A | Asp473Asn | TSP type-3 7 | |
| 13 | c.1417G > C | Asp473His | TSP type-3 7 | |
| 13 | c.1417G > T | Asp473Tyr | TSP type-3 7 | |
| 13 | c.1418 A > G | Asp473Gly | TSP type-3 7 | |
| 13 | c.1420_1425dupAATGAC | ins 6 bp codon 476 | TSP type-3 7 | |
| 13 | c.1423G > A | Asp475Asn | TSP type-3 7 | |
| 13 | c.1423G > C | Asp475His | TSP type-3 7 | |
| 13 | c.1435G > T | Asp479Tyr | TSP type-3 7 | |
| 13 | c.1444G > A | Asp482Asn | TSP type-3 7 | |
| 13 | c.1444G > C | Asp482His | TSP type-3 7 | |
| 13 | c.1445 A > G | Asp482Gly | TSP type-3 7 | |
| 13 | c.1450 T > G | Cys484Gly | TSP type-3 7 | |
| 13 | c.1489 + 28G > A | IVS13 ds G-A +28 | TSP type-3 7 | |
| 13 | c.1510 T > C | Cys504Arg | TSP type-3 8 | |
| 13 | c.1511G > A | Cys504Tyr | TSP type-3 8 | |
| 13 | c.1511G > C | Cys504Ser | TSP type-3 8 | |
| 13 | c.1520 A > G | Asp507Gly | TSP type-3 8 | |
| 13 | c.1525G > A | Asp509Asn | TSP type-3 8 | |
| 14 | c.1526 A > C | Asp509Ala | TSP type-3 8 | |
| 14 | c.1526 A > G | Asp509Gly | TSP type-3 8 | |
| 14 | c.1526 A > T | Asp509Val | TSP type-3 8 | |
| 14 | c.1527 T > G | Asp509Glu | TSP type-3 8 | |
| 14 | c.1529_1540delCAGACAAGGTGG | del 12 bp codon 510 | TSP type-3 8 | |
| 14 | c.1531G > C | Asp511His | TSP type-3 8 | |
| 14 | c.1531G > T | Asp511Tyr | TSP type-3 8 | |
| 14 | c.1532 A > G | Asp511Gly | TSP type-3 8 | |
| 14 | c.1533C > G | Asp511Glu | TSP type-3 8 | |
| 14 | c.1537_1548delGTGGTAGACAAG | del 12 bp codon 513 | TSP type-3 8 | |
| 14 | c.1544 A > G | Asp515Gly | TSP type-3 8 | |
| 14 | c.1552G > A | Asp518Asn | TSP type-3 8 | |
| 14 | c.1552G > C | Asp518His | TSP type-3 8 | |
| 14 | c.1553 A > G | Asp518Gly | TSP type-3 8 | |
| 14 | c.1579 A > G | Thr527Ala | TSP type-3 8 | |
| 14 | c.1585 A > G | Thr529Ala | CTD | |
| 14 | c.1586C > T | Thr529Ile | CTD | |
| 15 | c.1747G > A | Glu583Lys | CTD | |
| 16 | c.1754C > A | Thr585Lys | CTD | |
| 16 | c.1754C > T | Thr585Met | CTD | |
| 16 | c.1760 A > G | His587Arg | CTD | |
| 18 | c.2155G > A | Gly719Ser | CTD | |
| 18 | c.2156G > A | Gly719Asp | CTD | |
| Null | c.N | deletion c.1048_1116del69 | Null | |
| Null | c.N | deletion 553 bp incl. ex. 9 | Null | |
| Null | c.N | deletion 21 bp nt 831–851, cd. 277–283 | Null |
Figure 1pedigree chart of the family.
Figure 2Radiographic findings of the patient: 1. Short tubular bones with irregular epiphyses and metaphyses (a,c); 2. Bilateral short and thick femoral neck, flattened femoral head (b); 3. Anterior tonguing or beaking of the vertebral bodies (d); 4. Normal skull(e).
Figure 3Consequence of DNA analysis. a. The proband: heterozygous mutation. b. His mother: heterozygous mutation. c. His father: normal.
Figure 4PolyPhen-2.
Figure 5SIFT prediction: prediction of the protein function can be more accurate when the number of the amino acid ranges from 300 to 400, so we have deleted the first 300 amino acids and the last 157 amino acids of COMP.