Literature DB >> 30904378

A Scalable, Multiplexed Assay for Decoding GPCR-Ligand Interactions with RNA Sequencing.

Eric M Jones1, Rishi Jajoo1, Daniel Cancilla1, Nathan B Lubock1, Jeffrey Wang1, Megan Satyadi1, Rocky Cheung1, Claire de March2, Joshua S Bloom3, Hiroaki Matsunami2, Sriram Kosuri4.   

Abstract

G protein-coupled receptors (GPCRs) are central to how mammalian cells sense and respond to chemicals. Mammalian olfactory receptors (ORs), the largest family of GPCRs, mediate the sense of smell through activation by small molecules, though for most bonafide ligands, they have not been identified. Here, we introduce a platform to screen large chemical panels against multiplexed GPCR libraries using next-generation sequencing of barcoded genetic reporters in stably engineered human cell lines. We mapped 39 mammalian ORs against 181 odorants and identified 79 interactions that have not been reported to our knowledge, including ligands for 15 previously orphaned receptors. This multiplexed receptor assay allows the cost-effective mapping of large chemical libraries to receptor repertoires at scale.
Copyright © 2019. Published by Elsevier Inc.

Entities:  

Keywords:  GPCR; MPRA; NGS; high-throughput; multiplex; olfaction; synthetic biology

Mesh:

Substances:

Year:  2019        PMID: 30904378      PMCID: PMC6907015          DOI: 10.1016/j.cels.2019.02.009

Source DB:  PubMed          Journal:  Cell Syst        ISSN: 2405-4712            Impact factor:   10.304


  34 in total

1.  Nonmonotonic dose-response relationships: mechanistic basis, kinetic modeling, and implications for risk assessment.

Authors:  Rory B Conolly; Werner K Lutz
Journal:  Toxicol Sci       Date:  2003-11-04       Impact factor: 4.849

2.  Ric-8B, an olfactory putative GTP exchange factor, amplifies signal transduction through the olfactory-specific G-protein Galphaolf.

Authors:  Luiz Eduardo C Von Dannecker; Adriana F Mercadante; Bettina Malnic
Journal:  J Neurosci       Date:  2005-04-13       Impact factor: 6.167

Review 3.  Insulators: exploiting transcriptional and epigenetic mechanisms.

Authors:  Miklos Gaszner; Gary Felsenfeld
Journal:  Nat Rev Genet       Date:  2006-08-15       Impact factor: 53.242

4.  A novel multigene family may encode odorant receptors: a molecular basis for odor recognition.

Authors:  L Buck; R Axel
Journal:  Cell       Date:  1991-04-05       Impact factor: 41.582

5.  Evaluating cell-surface expression and measuring activation of mammalian odorant receptors in heterologous cells.

Authors:  Hanyi Zhuang; Hiroaki Matsunami
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

6.  Biophysical and functional characterization of the human olfactory receptor OR1A1 expressed in a mammalian inducible cell line.

Authors:  Christine Belloir; Marie-Louise Miller-Leseigneur; Fabrice Neiers; Loïc Briand; Anne-Marie Le Bon
Journal:  Protein Expr Purif       Date:  2016-09-15       Impact factor: 1.650

7.  Luciferase Reporter Assay System for Deciphering GPCR Pathways.

Authors:  Zhijie Cheng; Denise Garvin; Aileen Paguio; Pete Stecha; Keith Wood; Frank Fan
Journal:  Curr Chem Genomics       Date:  2010-12-21

8.  Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.

Authors:  Davis J McCarthy; Yunshun Chen; Gordon K Smyth
Journal:  Nucleic Acids Res       Date:  2012-01-28       Impact factor: 16.971

9.  Study of a synthetic human olfactory receptor 17-4: expression and purification from an inducible mammalian cell line.

Authors:  Brian L Cook; Karin E Ernberg; Hyeyoun Chung; Shuguang Zhang
Journal:  PLoS One       Date:  2008-08-06       Impact factor: 3.240

10.  Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals.

Authors:  Yoshihito Niimura; Atsushi Matsui; Kazushige Touhara
Journal:  Genome Res       Date:  2014-07-22       Impact factor: 9.043

View more
  6 in total

Review 1.  Therapeutic Opportunities in Inflammatory Bowel Disease: Mechanistic Dissection of Host-Microbiome Relationships.

Authors:  Damian R Plichta; Daniel B Graham; Sathish Subramanian; Ramnik J Xavier
Journal:  Cell       Date:  2019-08-22       Impact factor: 41.582

Review 2.  Advances in G protein-coupled receptor high-throughput screening.

Authors:  Emily A Yasi; Nicholas S Kruyer; Pamela Peralta-Yahya
Journal:  Curr Opin Biotechnol       Date:  2020-07-10       Impact factor: 9.740

3.  A 3D transcriptomics atlas of the mouse nose sheds light on the anatomical logic of smell.

Authors:  Mayra L Ruiz Tejada Segura; Eman Abou Moussa; Elisa Garabello; Thiago S Nakahara; Melanie Makhlouf; Lisa S Mathew; Li Wang; Filippo Valle; Susie S Y Huang; Joel D Mainland; Michele Caselle; Matteo Osella; Stephan Lorenz; Johannes Reisert; Darren W Logan; Bettina Malnic; Antonio Scialdone; Luis R Saraiva
Journal:  Cell Rep       Date:  2022-03-22       Impact factor: 9.423

4.  Sequence-Based Prediction of Olfactory Receptor Responses.

Authors:  Shashank Chepurwar; Abhishek Gupta; Rafi Haddad; Nitin Gupta
Journal:  Chem Senses       Date:  2019-10-26       Impact factor: 3.160

Review 5.  Engineering G protein-coupled receptor signalling in yeast for biotechnological and medical purposes.

Authors:  Bettina Lengger; Michael K Jensen
Journal:  FEMS Yeast Res       Date:  2020-02-01       Impact factor: 2.796

6.  Structural and functional characterization of G protein-coupled receptors with deep mutational scanning.

Authors:  Eric M Jones; Nathan B Lubock; A J Venkatakrishnan; Jeffrey Wang; Alex M Tseng; Joseph M Paggi; Naomi R Latorraca; Daniel Cancilla; Megan Satyadi; Jessica E Davis; M Madan Babu; Ron O Dror; Sriram Kosuri
Journal:  Elife       Date:  2020-10-21       Impact factor: 8.140

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.