Literature DB >> 30904190

Aquatic Landscape Genomics and Environmental Effects on Genetic Variation.

Jared A Grummer1, Luciano B Beheregaray2, Louis Bernatchez3, Brian K Hand4, Gordon Luikart4, Shawn R Narum5, Eric B Taylor6.   

Abstract

Aquatic species represent a vast diversity of metazoans, provide humans with the most abundant animal protein source, and are of increasing conservation concern, yet landscape genomics is dominated by research in terrestrial systems. We provide researchers with a roadmap to plan aquatic landscape genomics projects by aggregating spatial and software resources and offering recommendations from sampling to data production and analyses, while cautioning against analytical pitfalls. Given the unique properties of water, we discuss the importance of considering freshwater system structure and marine abiotic properties when assessing genetic diversity, population connectivity, and signals of natural selection. When possible, genomic datasets should be parsed into neutral, adaptive, and sex-linked datasets to generate the most accurate inferences of eco-evolutionary processes.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  adaptive capacity; conservation; fragmentation; gene flow; riverscape genetics; seascape

Mesh:

Year:  2019        PMID: 30904190     DOI: 10.1016/j.tree.2019.02.013

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  18 in total

1.  Genomics-informed models reveal extensive stretches of coastline under threat by an ecologically dominant invasive species.

Authors:  Jamie Hudson; Juan Carlos Castilla; Peter R Teske; Luciano B Beheregaray; Ivan D Haigh; Christopher D McQuaid; Marc Rius
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

2.  Seascape genomics of common dolphins (Delphinus delphis) reveals adaptive diversity linked to regional and local oceanography.

Authors:  Andrea Barceló; Jonathan Sandoval-Castillo; Chris J Brauer; Kerstin Bilgmann; Guido J Parra; Luciano B Beheregaray; Luciana M Möller
Journal:  BMC Ecol Evol       Date:  2022-07-12

3.  Restricted dispersal in a sea of gene flow.

Authors:  L Benestan; K Fietz; N Loiseau; P E Guerin; E Trofimenko; S Rühs; C Schmidt; W Rath; A Biastoch; A Pérez-Ruzafa; P Baixauli; A Forcada; E Arcas; P Lenfant; S Mallol; R Goñi; L Velez; M Höppner; S Kininmonth; D Mouillot; O Puebla; S Manel
Journal:  Proc Biol Sci       Date:  2021-05-19       Impact factor: 5.530

4.  Individual-based population genomics reveal different drivers of adaptation in sympatric fish.

Authors:  Enrique Macpherson; Marta Pascual; Héctor Torrado; Carlos Carreras; Núria Raventos
Journal:  Sci Rep       Date:  2020-07-29       Impact factor: 4.379

5.  A river runs through it: The causes, consequences, and management of intraspecific diversity in river networks.

Authors:  Simon Blanchet; Jérôme G Prunier; Ivan Paz-Vinas; Keoni Saint-Pé; Olivier Rey; Allan Raffard; Eglantine Mathieu-Bégné; Géraldine Loot; Lisa Fourtune; Vincent Dubut
Journal:  Evol Appl       Date:  2020-03-17       Impact factor: 4.929

6.  Within-Generation Polygenic Selection Shapes Fitness-Related Traits across Environments in Juvenile Sea Bream.

Authors:  Carine Rey; Audrey Darnaude; Franck Ferraton; Bruno Guinand; François Bonhomme; Nicolas Bierne; Pierre-Alexandre Gagnaire
Journal:  Genes (Basel)       Date:  2020-04-07       Impact factor: 4.096

7.  Temporal dynamics of migration-linked genetic variation are driven by streamflows and riverscape permeability.

Authors:  Suzanne J Kelson; Michael R Miller; Tasha Q Thompson; Sean M O'Rourke; Stephanie M Carlson
Journal:  Mol Ecol       Date:  2020-02-17       Impact factor: 6.185

8.  Genomic data support management of anadromous Arctic Char fisheries in Nunavik by highlighting neutral and putatively adaptive genetic variation.

Authors:  Xavier Dallaire; Éric Normandeau; Julien Mainguy; Jean-Éric Tremblay; Louis Bernatchez; Jean-Sébastien Moore
Journal:  Evol Appl       Date:  2021-05-27       Impact factor: 5.183

9.  Green, yellow or black? Genetic differentiation and adaptation signatures in a highly migratory marine turtle.

Authors:  Rocío Álvarez-Varas; Noemi Rojas-Hernández; Maike Heidemeyer; Cynthia Riginos; Hugo A Benítez; Raúl Araya-Donoso; Eduardo Reséndiz; Mónica Lara-Uc; Daniel A Godoy; Juan Pablo Muñoz-Pérez; Daniela E Alarcón-Ruales; Joanna Alfaro-Shigueto; Clara Ortiz-Alvarez; Jeffrey C Mangel; Juliana A Vianna; David Véliz
Journal:  Proc Biol Sci       Date:  2021-07-07       Impact factor: 5.530

10.  Genome-wide SNPs resolve spatiotemporal patterns of connectivity within striped marlin (Kajikia audax), a broadly distributed and highly migratory pelagic species.

Authors:  Nadya R Mamoozadeh; John E Graves; Jan R McDowell
Journal:  Evol Appl       Date:  2019-11-22       Impact factor: 5.183

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