| Literature DB >> 30899585 |
Luminita Moraru1, Simona Moldovanu1,2, Lucian Traian Dimitrievici1, Nilanjan Dey3, Amira S Ashour4, Fuqian Shi5, Simon James Fong6, Salam Khan7, Anjan Biswas7,8,9.
Abstract
A Gaussian mixture model (GMM)-based classification technique is employed for a quantitative global assessment of brain tissue changes by using pixel intensities and contrast generated by b-values in diffusion tensor imaging (DTI). A hemisphere approach is also proposed. A GMM identifies the variability in the main brain tissues at a macroscopic scale rather than searching for tumours or affected areas. The asymmetries of the mixture distributions between the hemispheres could be used as a sensitive, faster tool for early diagnosis. The k-means algorithm optimizes the parameters of the mixture distributions and ensures that the global maxima of the likelihood functions are determined. This method has been illustrated using 18 sub-classes of DTI data grouped into six levels of diffusion weighting (b = 0; 250; 500; 750; 1000 and 1250 s/mm2) and three main brain tissues. These tissues belong to three subjects, i.e., healthy, multiple haemorrhage areas in the left temporal lobe and ischaemic stroke. The mixing probabilities or weights at the class level are estimated based on the sub-class-level mixing probability estimation. Furthermore, weighted Euclidean distance and multiple correlation analysis are applied to analyse the dissimilarity of mixing probabilities between hemispheres and subjects. The silhouette data evaluate the objective quality of the clustering. By using a GMM in the present study, we establish an important variability in the mixing probability associated with white matter and grey matter between the left and right hemispheres.Entities:
Keywords: Brain hemispheres; Cluster validity; Clustering; Gaussian mixture model; Weight distribution; Weighted Euclidean distance
Year: 2019 PMID: 30899585 PMCID: PMC6413310 DOI: 10.1016/j.jare.2019.01.001
Source DB: PubMed Journal: J Adv Res ISSN: 2090-1224 Impact factor: 10.479
Fig. 1Algorithm scheme.
Correlation coefficients and multiple correlation coefficients.
| Correlation coefficient | Multiple correlation coefficient | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Left hemisphere | 0.658 | −0.421 | 0.214 | 0.654 | 0.515 | −0.612 | 0.214 | −0.031 | 0.295 | 0.528 | 0.429 | 0.545 |
| Right hemisphere | 0.751 | −0.773 | 0.654 | 0.443 | 0.339 | 0.622 | 0.336 | −0.214 | 0.345 | 0.714 | 0.699 | 0.564 |
Fig. 2DTI brain image of a healthy patient for b = 500 s/mm2. (a) Skull stripping of the whole brain; (b) result of GMM classification; (c) hemisphere segmentation.
GMM average mixing probability for the left hemisphere with and without diffusion gradients. The data are summarized for three mixing probabilities (w1 for GM, w2 for WM and w3 for CSF) and for three subjects H, HA and IS.
| b0 | 0.30 ± 0.012 | 0.26 ± 0.008 | 0.22 ± 0.014 | 0.55 ± 0.049 | 0.58 ± 0.048 | 0.55 ± 0.064 | 0.14 ± 0.045 | 0.15 ± 0.045 | 0.17 ± 0.061 |
| b250 | 0.32 ± 0.021 | 0.30 ± 0.017 | 0.29 ± 0.020 | 0.52 ± 0.046 | 0.52 ± 0.051 | 0.54 ± 0.059 | 0.14 ± 0.051 | 0.15 ± 0.051 | 0.15 ± 0.0.047 |
| b500 | 0.32 ± 0.027 | 0.30 ± 0.020 | 0.29 ± 0.021 | 0.52 ± 0.056 | 0.54 ± 0.057 | 0.55 ± 0.048 | 0.14 ± 0.045 | 0.15 ± 0.047 | 0.15 ± 0.051 |
| b750 | 0.33 ± 0.023 | 0.29 ± 0.023 | 0.29 ± 0.021 | 0.54 ± 0.015 | 0.55 ± 0.052 | 0.56 ± 0.053 | 0.13 ± 0.007 | 0.15 ± 0.042 | 0.15 ± 0.041 |
| b1000 | 0.32 ± 0.021 | 0.29 ± 0.020 | 0.29 ± 0.019 | 0.52 ± 0.048 | 0.55 ± 0.053 | 0.55 ± 0.058 | 0.14 ± 0.050 | 0.15 ± 0.052 | 0.15 ± 0.048 |
| b1250 | 0.33 ± 0.025 | 0.28 ± 0.018 | 0.28 ± 0.016 | 0.55 ± 0.059 | 0.55 ± 0.055 | 0.55 ± 0.056 | 0.14 ± 0.044 | 0.15 ± 0.050 | 0.15 ± 0.049 |
GMM average mixing probability for the right hemisphere with and without diffusion gradients. The data are summarized for three mixing probabilities (w1 for GM, w2 for WM and w3 for CSF) and for three subjects H, HA and IS.
| b0 | 0.32 ± 0.016 | 0.33 ± 0.018 | 0.28 ± 0.013 | 0.54 ± 0.041 | 0.53 ± 0.050 | 0.57 ± 0.039 | 0.12 ± 0.032 | 0.13 ± 0.041 | 0.14 ± 0.048 |
| b250 | 0.34 ± 0.022 | 0.33 ± 0.041 | 0.30 ± 0.021 | 0.51 ± 0.053 | 0.53 ± 0.051 | 0.53 ± 0.059 | 0.14 ± 0.045 | 0.13 ± 0.044 | 0.15 ± 0.047 |
| b500 | 0.34 ± 0.022 | 0.34 ± 0.029 | 0.30 ± 0.028 | 0.50 ± 0.050 | 0.51 ± 0.059 | 0.52 ± 0.055 | 0.14 ± 0.045 | 0.14 ± 0.044 | 0.15 ± 0.050 |
| b750 | 0.35 ± 0.016 | 0.34 ± 0.029 | 0.28 ± 0.023 | 0.52 ± 0.007 | 0.48 ± 0.042 | 0.52 ± 0.041 | 0.13 ± 0.039 | 0.13 ± 0.039 | 0.16 ± 0.043 |
| b1000 | 0.33 ± 0.018 | 0.33 ± 0.029 | 0.30 ± 0.029 | 0.51 ± 0.054 | 0.51 ± 0.060 | 0.53 ± 0.055 | 0.14 ± 0.044 | 0.14 ± 0.045 | 0.15 ± 0.047 |
| b1250 | 0.34 ± 0.019 | 0.33 ± 0.026 | 0.30 ± 0.023 | 0.54 ± 0.053 | 0.51 ± 0.057 | 0.51 ± 0.061 | 0.14 ± 0.044 | 0.14 ± 0.045 | 0.15 ± 0.046 |
Fig. 3Average weighted Euclidean distances for pairs of probability density function distributions of mixtures probability of GMM. Estimation is performed for all diffusion gradients and for each brain hemisphere. L denotes the left hemisphere, and R denotes the right hemisphere.
Fig. 4Silhouettes of a data set for three clusters (line 1 on the silhouette plot corresponds to healthy subjects, line 2 for HA and line 3 for IS). Row 1: whole brain; Row 2: right hemisphere; Row 3: left hemisphere.
Average silhouette width for evaluating clustering validity.
| Class | Whole brain | Left hemisphere | Right hemisphere |
|---|---|---|---|
| H | 0.9176 | 0.935 | 0.9284 |
| HA | 0.9829 | 0.9774 | 0.9326 |
| IS | 0.9989 | 0.8578 | 0.9296 |