Literature DB >> 30896931

Detection, Structure and Function of Modified DNA Bases.

Alexandre Hofer1, Zheng J Liu1, Shankar Balasubramanian1,2,3.   

Abstract

While some DNA base modifications such as 5-methylcytosine have been known and studied for decades, recent discoveries of a number of other modified bases have stimulated research to understand their origin and function. Chemistry-based methods for their detection and analysis have proven to be important for advancing the field. Here, we feature a selection of methods that have helped advance the field, along with some key advances in the understanding of how the chemistry of modified bases affects biological functions. We also discuss fundamental questions in the field that remain unanswered.

Entities:  

Year:  2019        PMID: 30896931     DOI: 10.1021/jacs.9b01915

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Highly selective detection of adenine and guanine by NH2-MIL-53(Fe)/CS/MXene nanocomposites with excellent electrochemical performance.

Authors:  Jing Chen; Shuying Li; Ying Chen; Jiao Yang; Jianbin Dong
Journal:  Mikrochim Acta       Date:  2022-08-12       Impact factor: 6.408

2.  TET-Like Oxidation in 5-Methylcytosine and Derivatives: A Computational and Experimental Study.

Authors:  Niko S W Jonasson; Rachel Janßen; Annika Menke; Fabian L Zott; Hendrik Zipse; Lena J Daumann
Journal:  Chembiochem       Date:  2021-09-23       Impact factor: 3.461

3.  Genome-wide detection of cytosine methylation by single molecule real-time sequencing.

Authors:  O Y Olivia Tse; Peiyong Jiang; Suk Hang Cheng; Wenlei Peng; Huimin Shang; John Wong; Stephen L Chan; Liona C Y Poon; Tak Y Leung; K C Allen Chan; Rossa W K Chiu; Y M Dennis Lo
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 11.205

4.  Selective Chemical Functionalization at N6-Methyladenosine Residues in DNA Enabled by Visible-Light-Mediated Photoredox Catalysis.

Authors:  Manuel Nappi; Alexandre Hofer; Shankar Balasubramanian; Matthew J Gaunt
Journal:  J Am Chem Soc       Date:  2020-12-11       Impact factor: 15.419

Review 5.  Mitochondrial nucleoid in cardiac homeostasis: bidirectional signaling of mitochondria and nucleus in cardiac diseases.

Authors:  Yuliang Feng; Wei Huang; Christian Paul; Xingguo Liu; Sakthivel Sadayappan; Yigang Wang; Siim Pauklin
Journal:  Basic Res Cardiol       Date:  2021-08-14       Impact factor: 17.165

6.  A porous organic polymer nanosphere-based fluorescent biosensing platform for simultaneous detection of multiplexed DNA via electrostatic attraction and π-π stacking interactions.

Authors:  Yujie Sun; Zhenzhong Lu; Wenlin Ma; Rui Wang; Chengwu Zhang; Jinhua Liu
Journal:  RSC Adv       Date:  2021-12-03       Impact factor: 3.361

7.  Simultaneous electrochemical detection of guanine and adenine using reduced graphene oxide decorated with AuPt nanoclusters.

Authors:  Brennan Mao; Lanting Qian; Maduraiveeran Govindhan; Zhonggang Liu; Aicheng Chen
Journal:  Mikrochim Acta       Date:  2021-07-28       Impact factor: 5.833

8.  Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.

Authors:  Na Wang; Hongyu Bao; Liu Chen; Yanhong Liu; Yue Li; Baixing Wu; Hongda Huang
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

9.  Modified base-binding EVE and DCD domains: striking diversity of genomic contexts in prokaryotes and predicted involvement in a variety of cellular processes.

Authors:  Ryan T Bell; Yuri I Wolf; Eugene V Koonin
Journal:  BMC Biol       Date:  2020-11-04       Impact factor: 7.431

10.  Modulation of Energy Metabolism and Epigenetic Landscape in Rainbow Trout Fry by a Parental Low Protein/High Carbohydrate Diet.

Authors:  Thérèse Callet; Hongyan Li; Pascale Coste; Stéphane Glise; Cécile Heraud; Patrick Maunas; Yvan Mercier; Nicolas Turonnet; Chloé Zunzunegui; Stéphane Panserat; Valérie Bolliet; Lucie Marandel
Journal:  Biology (Basel)       Date:  2021-06-25
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