| Literature DB >> 30891207 |
Xue Wang1,2, Fei Liu1, Dan Yu1, Huanzhang Liu1.
Abstract
Opsariichthine (sensu Oceanologi Et Limnologia Sinica, 1982, 13, 293-298) is a cyprinid group consisting of five genera and endemic to East Asia. Previous studies suggested that there may be many possible cryptic species in this group, but this has not been confirmed. In this study, using mitochondrial cyt b sequences on 1,388 samples and 739 haplotypes, we showed very high species diversity within this group. The results showed that phylogenetic relationships of the opsariichthine group were as ([Nipponocypris-Parazacco-Candidia] + [Zacco + Opsariichthys]), and there were multiple deep lineages within several species, flagging putative cryptic species. When a 3% genetic distance was used as a threshold for species delimitation, 35 haplogroups were found, nine haplogroups in Candidia-Parazacco-Nipponocypris group, six haplogroups in the Zacco group, and 20 haplogroups in the Opsariichthys group. We consider all of them to be putative until determination of distinct species based on the tree topology, geographic distributions, or a combination of both. In addition, two kinds of species delimitation tools, ABGD and PTP, were applied to construct molecular operational taxonomic units (MOTUs). The ABGD method revealed nine MOTUs in Candidia-Parazacco-Nipponocypris group, two MOTUs in the Zacco group, and 17 MOTUs in the Opsariichthys group. And the PTP method revealed 10 MOTUs in Candidia-Parazacco-Nipponocypris group, 10 MOTUs in the Zacco group, and 29 MOTUs in the Opsariichthys group. Therefore, there should be more species in the opsariichthine group than presently described. Based on the molecular data and morphological characteristics, we proposed Opsariichthys macrolepis as a valid species and described its morphological diagnostic characters.Entities:
Keywords: Opsariichthys macrolepis; cryptic species; cytochrome b; opsariichthine; species delimitation; the upper Yangtze River
Year: 2019 PMID: 30891207 PMCID: PMC6405531 DOI: 10.1002/ece3.4933
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1Collection sites for the newly generated sequences of the present study. Details of the 21 sites and collected specimens are provided in Supporting Information Table S1. The numbers provided are the sample site numbers. This map was created in the ArcGIS version 10.1 (http://www.esri.com/arcgis/about-arcgis)
Figure 2Neighbor‐joining tree of opsariichthine showing the clustering of the MOTUs obtained by the species delimitation analyses based on cytochrome b gene sequences. Values at the nodes correspond to the support values for Neighbor‐joining, maximum likelihood and Bayesian inference (NJ/ML/BI) methods
Nucleotide distance between haplogroups under the K2P model
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | |||||||||||||||||||||||||||||||||||
| 2 | 0.089 | ||||||||||||||||||||||||||||||||||
| 3 | 0.088 | 0.066 | |||||||||||||||||||||||||||||||||
| 4 | 0.090 | 0.072 | 0.045 | ||||||||||||||||||||||||||||||||
| 5 | 0.090 | 0.064 | 0.047 | 0.055 | |||||||||||||||||||||||||||||||
| 6 | 0.118 | 0.126 | 0.132 | 0.132 | 0.135 | ||||||||||||||||||||||||||||||
| 7 | 0.122 | 0.125 | 0.126 | 0.133 | 0.133 | 0.113 | |||||||||||||||||||||||||||||
| 8 | 0.149 | 0.160 | 0.157 | 0.150 | 0.159 | 0.141 | 0.136 | ||||||||||||||||||||||||||||
| 9 | 0.154 | 0.156 | 0.164 | 0.162 | 0.160 | 0.156 | 0.141 | 0.095 | |||||||||||||||||||||||||||
| 10 | 0.150 | 0.153 | 0.161 | 0.158 | 0.162 | 0.143 | 0.157 | 0.171 | 0.174 | ||||||||||||||||||||||||||
| 11 | 0.154 | 0.151 | 0.155 | 0.152 | 0.155 | 0.142 | 0.149 | 0.167 | 0.167 | 0.037 | |||||||||||||||||||||||||
| 12 | 0.145 | 0.150 | 0.152 | 0.151 | 0.150 | 0.138 | 0.148 | 0.167 | 0.170 | 0.038 | 0.043 | ||||||||||||||||||||||||
| 13 | 0.144 | 0.141 | 0.151 | 0.152 | 0.151 | 0.128 | 0.148 | 0.169 | 0.169 | 0.040 | 0.043 | 0.032 | |||||||||||||||||||||||
| 14 | 0.143 | 0.149 | 0.147 | 0.145 | 0.156 | 0.136 | 0.145 | 0.163 | 0.176 | 0.068 | 0.074 | 0.074 | 0.072 | ||||||||||||||||||||||
| 15 | 0.181 | 0.179 | 0.170 | 0.177 | 0.176 | 0.160 | 0.162 | 0.175 | 0.180 | 0.143 | 0.139 | 0.141 | 0.136 | 0.142 | |||||||||||||||||||||
| 16 | 0.174 | 0.168 | 0.163 | 0.168 | 0.171 | 0.158 | 0.169 | 0.172 | 0.184 | 0.139 | 0.141 | 0.135 | 0.133 | 0.140 | 0.034 | ||||||||||||||||||||
| 17 | 0.176 | 0.172 | 0.168 | 0.172 | 0.174 | 0.157 | 0.161 | 0.173 | 0.181 | 0.139 | 0.142 | 0.140 | 0.136 | 0.138 | 0.041 | 0.043 | |||||||||||||||||||
| 18 | 0.166 | 0.168 | 0.166 | 0.171 | 0.173 | 0.163 | 0.162 | 0.181 | 0.179 | 0.137 | 0.139 | 0.135 | 0.132 | 0.138 | 0.040 | 0.046 | 0.037 | ||||||||||||||||||
| 19 | 0.166 | 0.168 | 0.171 | 0.169 | 0.174 | 0.169 | 0.181 | 0.180 | 0.188 | 0.143 | 0.145 | 0.147 | 0.149 | 0.150 | 0.144 | 0.143 | 0.129 | 0.132 | |||||||||||||||||
| 20 | 0.189 | 0.182 | 0.176 | 0.183 | 0.177 | 0.164 | 0.171 | 0.187 | 0.185 | 0.147 | 0.152 | 0.146 | 0.145 | 0.147 | 0.056 | 0.056 | 0.060 | 0.065 | 0.139 | ||||||||||||||||
| 21 | 0.172 | 0.181 | 0.168 | 0.171 | 0.169 | 0.163 | 0.172 | 0.180 | 0.188 | 0.148 | 0.151 | 0.150 | 0.149 | 0.147 | 0.076 | 0.074 | 0.079 | 0.077 | 0.147 | 0.080 | |||||||||||||||
| 22 | 0.168 | 0.159 | 0.170 | 0.172 | 0.171 | 0.162 | 0.167 | 0.183 | 0.185 | 0.138 | 0.142 | 0.140 | 0.137 | 0.140 | 0.125 | 0.128 | 0.115 | 0.122 | 0.094 | 0.130 | 0.125 | ||||||||||||||
| 23 | 0.172 | 0.158 | 0.170 | 0.171 | 0.175 | 0.156 | 0.165 | 0.187 | 0.173 | 0.139 | 0.142 | 0.136 | 0.134 | 0.147 | 0.114 | 0.119 | 0.107 | 0.112 | 0.094 | 0.118 | 0.126 | 0.046 | |||||||||||||
| 24 | 0.162 | 0.159 | 0.160 | 0.166 | 0.175 | 0.157 | 0.153 | 0.169 | 0.172 | 0.143 | 0.141 | 0.145 | 0.141 | 0.145 | 0.127 | 0.126 | 0.125 | 0.122 | 0.078 | 0.133 | 0.138 | 0.097 | 0.097 | ||||||||||||
| 25 | 0.161 | 0.163 | 0.173 | 0.171 | 0.171 | 0.155 | 0.167 | 0.185 | 0.176 | 0.141 | 0.141 | 0.139 | 0.136 | 0.145 | 0.126 | 0.123 | 0.121 | 0.116 | 0.095 | 0.130 | 0.123 | 0.095 | 0.086 | 0.093 | |||||||||||
| 26 | 0.161 | 0.161 | 0.167 | 0.163 | 0.170 | 0.155 | 0.159 | 0.175 | 0.170 | 0.141 | 0.135 | 0.140 | 0.135 | 0.148 | 0.127 | 0.127 | 0.125 | 0.118 | 0.101 | 0.136 | 0.128 | 0.097 | 0.085 | 0.091 | 0.046 | ||||||||||
| 27 | 0.159 | 0.165 | 0.174 | 0.174 | 0.176 | 0.163 | 0.171 | 0.181 | 0.177 | 0.130 | 0.131 | 0.130 | 0.128 | 0.145 | 0.124 | 0.116 | 0.117 | 0.115 | 0.101 | 0.127 | 0.118 | 0.104 | 0.088 | 0.101 | 0.052 | 0.058 | |||||||||
| 28 | 0.147 | 0.156 | 0.166 | 0.169 | 0.167 | 0.160 | 0.162 | 0.169 | 0.173 | 0.140 | 0.140 | 0.140 | 0.136 | 0.145 | 0.125 | 0.121 | 0.120 | 0.115 | 0.098 | 0.137 | 0.120 | 0.095 | 0.091 | 0.093 | 0.058 | 0.064 | 0.058 | ||||||||
| 29 | 0.164 | 0.161 | 0.175 | 0.177 | 0.167 | 0.164 | 0.162 | 0.185 | 0.179 | 0.146 | 0.142 | 0.146 | 0.142 | 0.144 | 0.125 | 0.124 | 0.124 | 0.117 | 0.102 | 0.135 | 0.127 | 0.102 | 0.094 | 0.102 | 0.073 | 0.087 | 0.077 | 0.068 | |||||||
| 30 | 0.165 | 0.154 | 0.172 | 0.176 | 0.166 | 0.163 | 0.166 | 0.180 | 0.183 | 0.135 | 0.135 | 0.133 | 0.126 | 0.141 | 0.125 | 0.121 | 0.121 | 0.118 | 0.105 | 0.131 | 0.131 | 0.098 | 0.085 | 0.103 | 0.072 | 0.077 | 0.068 | 0.068 | 0.044 | ||||||
| 31 | 0.158 | 0.157 | 0.167 | 0.170 | 0.168 | 0.162 | 0.170 | 0.186 | 0.190 | 0.145 | 0.146 | 0.138 | 0.136 | 0.140 | 0.129 | 0.125 | 0.125 | 0.117 | 0.099 | 0.138 | 0.121 | 0.097 | 0.091 | 0.101 | 0.076 | 0.083 | 0.077 | 0.074 | 0.067 | 0.061 | |||||
| 32 | 0.181 | 0.192 | 0.187 | 0.188 | 0.191 | 0.176 | 0.182 | 0.209 | 0.198 | 0.149 | 0.153 | 0.150 | 0.151 | 0.160 | 0.149 | 0.148 | 0.138 | 0.140 | 0.124 | 0.152 | 0.143 | 0.124 | 0.126 | 0.123 | 0.112 | 0.115 | 0.109 | 0.102 | 0.101 | 0.105 | 0.104 | ||||
| 33 | 0.160 | 0.171 | 0.174 | 0.175 | 0.180 | 0.158 | 0.162 | 0.183 | 0.176 | 0.141 | 0.142 | 0.136 | 0.141 | 0.148 | 0.149 | 0.143 | 0.141 | 0.142 | 0.105 | 0.145 | 0.143 | 0.093 | 0.095 | 0.104 | 0.096 | 0.107 | 0.100 | 0.082 | 0.089 | 0.092 | 0.089 | 0.102 | |||
| 34 | 0.146 | 0.144 | 0.151 | 0.149 | 0.149 | 0.131 | 0.151 | 0.161 | 0.170 | 0.035 | 0.032 | 0.035 | 0.038 | 0.065 | 0.135 | 0.129 | 0.130 | 0.138 | 0.145 | 0.142 | 0.146 | 0.137 | 0.139 | 0.144 | 0.139 | 0.136 | 0.131 | 0.140 | 0.146 | 0.136 | 0.146 | 0.157 | 0.143 | ||
| 35 | 0.153 | 0.153 | 0.159 | 0.162 | 0.157 | 0.155 | 0.163 | 0.180 | 0.179 | 0.148 | 0.146 | 0.143 | 0.140 | 0.146 | 0.135 | 0.133 | 0.126 | 0.127 | 0.104 | 0.142 | 0.136 | 0.099 | 0.092 | 0.102 | 0.081 | 0.085 | 0.082 | 0.072 | 0.066 | 0.055 | 0.052 | 0.105 | 0.099 | 0.148 |
Results of the Automatic Barcode Gap Discovery (ABGD) analyses of each dataset
| Dataset | Model | X | Partition | Prior intraspecific divergence ( | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 0.0215 | 0.0129 | 0.0077 | 0.0046 | 0.0028 | 0.0017 | 0.001 | ||||
|
| Simple | 1.5 | Initial | 9 | 9 | 9 | 9 | 9 | 9 | 9 |
| Recursive | 9 | 9 | 9 | 9 | 9 | 9 | 9 | |||
| JC | 1.5 | Initial | 9 | 9 | 9 | 9 | 9 | 9 | 9 | |
| Recursive | 9 | 9 | 9 | 9 | 9 | 9 | 9 | |||
| K2P | 1.5 | Initial | 9 | 9 | 9 | 9 | 9 | 9 | 9 | |
| Recursive | 9 | 9 | 9 | 9 | 9 | 9 | 9 | |||
|
| Simple | 1.5 | Initial | – | 17 | 17 | 17 | 23 | 23 | 23 |
| Recursive | – | 17 | 17 | 17 | 25 | 25 | 25 | |||
| JC | 1.5 | Initial | – | 17 | 17 | 22 | 26 | 44 | 44 | |
| Recursive | – | 17 | 17 | 20 | 26 | 47 | 47 | |||
| K2P | 1.5 | Initial | – | 17 | 19 | 20 | 34 | 44 | 48 | |
| Recursive | – | 17 | 19 | 20 | 34 | 43 | 48 | |||
|
| Simple | 1.5 | Initial | 2 | 2 | 2 | 6 | 6 | 6 | 6 |
| Recursive | 2 | 2 | 2 | 6 | 7 | 8 | 8 | |||
| JC | 1.5 | Initial | 2 | 2 | 5 | 7 | 7 | 7 | 7 | |
| Recursive | 2 | 3 | 7 | 8 | 8 | 13 | 17 | |||
| K2P | 1.5 | Initial | 2 | 2 | 5 | 6 | 7 | 7 | 7 | |
| Recursive | 2 | 2 | 7 | 8 | 8 | 11 | 18 | |||
JC69, Jukes–Cantor substitution model; K2P, Kimura 2‐parameter substitution model; simple, p‐distance; X, relative gap width.
Figure 3Opsariichthys macrolepis, alive male, IHCAS 17051383, 130.0 mm SL, Yangtze River, Hejiang Country, Sichuan Province
Morphological differences among three Opsariichthys species
| Character |
|
|
|
|---|---|---|---|
| Lateral line sales | 46–49 | 42–44 | > 45 |
| Predorsal scales | 7–19 | 15–17 | 15–17 |
| Scales above lateral‐line | 8 | 9 | 8 |
| Scales below lateral‐line | 3 | 4 | 4 |
| Scales surrounding caudal peduncle | 17–18 | 18–20 | 16–17 |
| The number of branched rays of pectoral | 14 | 15 | 14 |
| Whether the pectoral extending the origin of ventral fin | Not reaching or slightly extending | Never reaching | Extending far beyond |
| Whether the maxillary extending the vertical of anterior margin of orbit | Not reaching to or slightly extending | Extending | Never extending |
| The number of stripes on the flanks | 11–14 | 9–10 | 11 |
| The number of tubercles on lower jaw | 2–3 rows, 15–21 tubercles | 1 row, <10 tubercles | 1 row, 6 tubercles |
| Population distribution | The upper Yangtze River | Southern China | The southeast coastal areas of China |
| Type locality | The upper Yangtze River | Yangtze River | Chinese Taiwan |