Literature DB >> 30888575

Unified theoretical description of the kinetics of protein aggregation.

Nami Hirota1, Herman Edskes2, Damien Hall3.   

Abstract

Solution conditions chosen for the production of amyloid can also promote formation of significant extents of amorphous protein aggregate. In one interpretation, the amyloid and amorphous aggregation pathways are considered to be in competition with each other. An alternative conceptualization involves considering amorphous aggregation as an obligatory intermediate process of the amyloid formation pathway. Here, we review recently developed macroscopic-level theories of protein aggregation that unify these two competing models into a single paradigm. Key features of the unified model included (1) a description of the amorphous aggregate as a second liquid phase with the degree of liquid-like character determined by the mobility of the monomer within it, and (2) heterogeneous growth pathways based on nucleation, growth, and fragmentation of amyloid occurring within different phases and at their interfacial boundary. Limiting-case behaviors of the protein aggregation reaction, either singly involving amyloid or amorphous aggregate production, and mixed-case behaviors, involving competitive and/or facilitated growth of amorphous and amyloid species, are presented and reviewed in context. This review principally describes an approach developed by Hirota and Hall 2019 (Hirota, N. and Hall, D. 2019. Protein Aggregation Kinetics: A Unified Theoretical Description. Chapter 7 of 'Protein Solubility and Amorphous Aggregation: From Academic Research to Applications in Drug Discovery and Bioindustry' edited by Y. Kuroda and F. Arisaka. CMC Publishers). Sections of that work are translated from the original Japanese and republished here with the full permission of CMC Publishing Corporation.

Entities:  

Keywords:  Amyloid; Kinetics; Protein aggregation; United model

Year:  2019        PMID: 30888575      PMCID: PMC6441446          DOI: 10.1007/s12551-019-00506-5

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  8 in total

1.  2019-A year in Biophysical Reviews.

Authors:  Damien Hall
Journal:  Biophys Rev       Date:  2019-11-18

2.  Toxic SOD1 trimers are off-pathway in the formation of amyloid-like fibrils in ALS.

Authors:  Brianna Hnath; Nikolay V Dokholyan
Journal:  Biophys J       Date:  2022-05-03       Impact factor: 3.699

Review 3.  Protein aggregation: in silico algorithms and applications.

Authors:  R Prabakaran; Puneet Rawat; A Mary Thangakani; Sandeep Kumar; M Michael Gromiha
Journal:  Biophys Rev       Date:  2021-01-17

4.  On the nature of the optimal form of the holdase-type chaperone stress response.

Authors:  Damien Hall
Journal:  FEBS Lett       Date:  2019-09-21       Impact factor: 3.864

Review 5.  Life in Phases: Intra- and Inter- Molecular Phase Transitions in Protein Solutions.

Authors:  Vladimir N Uversky; Alexei V Finkelstein
Journal:  Biomolecules       Date:  2019-12-08

6.  Chaperone-Like Activity of HSPB5: The Effects of Quaternary Structure Dynamics and Crowding.

Authors:  Natalia A Chebotareva; Svetlana G Roman; Vera A Borzova; Tatiana B Eronina; Valeriya V Mikhaylova; Boris I Kurganov
Journal:  Int J Mol Sci       Date:  2020-07-13       Impact factor: 5.923

Review 7.  Computational models for studying physical instabilities in high concentration biotherapeutic formulations.

Authors:  Marco A Blanco
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

8.  Nanoscale Surface Topography Modulates hIAPP Aggregation Pathways at Solid-Liquid Interfaces.

Authors:  Marcel Hanke; Yu Yang; Yuxin Ji; Guido Grundmeier; Adrian Keller
Journal:  Int J Mol Sci       Date:  2021-05-13       Impact factor: 5.923

  8 in total

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