Literature DB >> 30877381

Invited review-next-generation sequencing: a modern tool in cytopathology.

Sinchita Roy-Chowdhuri1, Pasquale Pisapia2, Manuel Salto-Tellez3, Spasenija Savic4, Mariantonia Nacchio2, Dario de Biase5, Giovanni Tallini6, Giancarlo Troncone7, Fernando Schmitt8,9.   

Abstract

In recent years, cytopathology has established itself as an independent diagnostic modality to guide clinical management in many different settings. The application of molecular techniques to cytological samples to identify prognostic and predictive biomarkers has played a crucial role in achieving this goal. While earlier studies have demonstrated that single biomarker testing is feasible on cytological samples, currently, this provides only limited and increasingly insufficient information in an era where an increasing number of biomarkers are required to guide patient care. More recently, multigene mutational assays, such as next-generation sequencing (NGS), have gained popularity because of their ability to provide genomic information on multiple genes. The cytopathologist plays a key role in ensuring success of NGS in cytological samples by influencing the pre-analytical steps, optimizing preparation types and adequacy requirement in terms of cellularity and tumor fraction, and ensuring optimal nucleic acid extraction for DNA input requirements. General principles of the role and potential of NGS in molecular cytopathology in the universal healthcare (UHC) European environment and examples of principal clinical applications were discussed in the workshop that took place at the 30th European Congress of Pathology in Bilbao, European Society of Pathology, whose content is here comprehensively described.

Entities:  

Keywords:  Cell block; Direct smears; Fine-needle aspiration; Liquid-based cytology; Molecular cytopathology; Next-generation sequencing

Mesh:

Substances:

Year:  2019        PMID: 30877381     DOI: 10.1007/s00428-019-02559-z

Source DB:  PubMed          Journal:  Virchows Arch        ISSN: 0945-6317            Impact factor:   4.064


  7 in total

1.  Analytical validation of a novel targeted next-generation sequencing assay for mutation detection in thyroid nodule aspirates and tissue.

Authors:  Antonella Verrienti; Valeria Pecce; Luana Abballe; Valeria Ramundo; Rosa Falcone; Farzaneh Inanloo Nigi Jak; Chiara Brunelli; Guido Fadda; Daniela Bosco; Valeria Ascoli; Raffaella Carletti; Cira Di Gioia; Giorgio Grani; Marialuisa Sponziello
Journal:  Endocrine       Date:  2020-06-06       Impact factor: 3.633

2.  The rapidly evolving landscape of biomarker testing in non-small cell lung cancer.

Authors:  Paul A VanderLaan; Deepa Rangachari; Daniel B Costa
Journal:  Cancer Cytopathol       Date:  2020-08-05       Impact factor: 5.284

Review 3.  Molecular Profiling of Malignant Pleural Effusions with Next Generation Sequencing (NGS): Evidence that Supports Its Role in Cancer Management.

Authors:  Georgia Ι Grigoriadou; Stepan M Esagian; Han Suk Ryu; Ilias P Nikas
Journal:  J Pers Med       Date:  2020-11-01

Review 4.  Practice guidelines for BRCA1/2 tumour testing in ovarian cancer.

Authors:  Daria Grafodatskaya; Darren D O'Rielly; Karine Bedard; Darci T Butcher; Christopher J Howlett; Alice Lytwyn; Elizabeth McCready; Jillian Parboosingh; Elizabeth L Spriggs; Andrea K Vaags; Tracy L Stockley
Journal:  J Med Genet       Date:  2022-04-07       Impact factor: 5.941

Review 5.  Molecular Testing on Cytology for Gene Fusion Detection.

Authors:  Fernando Schmitt; Alessia Di Lorito; Philippe Vielh
Journal:  Front Med (Lausanne)       Date:  2021-07-06

6.  Next-generation sequencing analysis of endometrial screening liquid-based cytology specimens: a comparative study to tissue specimens.

Authors:  Toshiaki Akahane; Ikumi Kitazono; Shintaro Yanazume; Masaki Kamio; Shinichi Togami; Ippei Sakamoto; Sachio Nohara; Seiya Yokoyama; Hiroaki Kobayashi; Tsubasa Hiraki; Shinsuke Suzuki; Shinichi Ueno; Akihide Tanimoto
Journal:  BMC Med Genomics       Date:  2020-07-11       Impact factor: 3.063

Review 7.  Evaluating Pancreatic and Biliary Neoplasms with Small Biopsy-Based Next Generation Sequencing (NGS): Doing More with Less.

Authors:  Ilias P Nikas; Giannis Mountzios; Guy I Sydney; Kalliopi J Ioakim; Jae-Kyung Won; Panagiotis Papageorgis
Journal:  Cancers (Basel)       Date:  2022-01-13       Impact factor: 6.639

  7 in total

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